Jatropha Genome Database

JcCB0234781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234781.10 + phase: 0 
         (154 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40660.1 | Symbols:  | ATP12 protein-related | chr5:16283650-...   119   7e-28

>AT5G40660.1 | Symbols:  | ATP12 protein-related |
           chr5:16283650-16285161 REVERSE
          Length = 325

 Score =  119 bits (298), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/87 (67%), Positives = 63/87 (72%), Gaps = 3/87 (3%)

Query: 61  IFLKAPNSNAKLDAAPSSSVTMPMSFMTGSIVGKRFYKQVTTREADDGNGWTVMLDYRTL 120
           I +KAPNS  K +   S SVTMP SFMTGSIVGKRFYK+VTTREADDGNGWTVMLDYRTL
Sbjct: 57  ILVKAPNSRRKNE---SDSVTMPTSFMTGSIVGKRFYKKVTTREADDGNGWTVMLDYRTL 113

Query: 121 KTPSKRXXXXXXXXXXXXXXXEWEYQV 147
           KTPSKR               EWEYQ+
Sbjct: 114 KTPSKRPLKLRSLALAKAIAAEWEYQL 140