Jatropha Genome Database

JcCB0234681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234681.10 + phase: 0 /partial
         (152 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23260.2 | Symbols: TT16, ABS | TT16 (TRANSPARENT TESTA16); t...   130   2e-31
AT5G23260.1 | Symbols: TT16, ABS, AGL32 | TT16 (TRANSPARENT TEST...   117   3e-27
AT5G23260.3 | Symbols: TT16, ABS | TT16 (TRANSPARENT TESTA16); t...   101   2e-22

>AT5G23260.2 | Symbols: TT16, ABS | TT16 (TRANSPARENT TESTA16);
           transcription factor | chr5:7836442-7838340 FORWARD
          Length = 252

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 105/185 (56%), Gaps = 37/185 (20%)

Query: 2   RMQQIIERYQKVKGTSIPEH---------------------DSRMKRYMGEDMSSIPFXX 40
           RM Q+I+RY    G  +P+H                     + R++ + G D++SIP   
Sbjct: 63  RMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNE 122

Query: 41  XXXXXXXXXRSVAKVRNRKNELLQQQLDNLHRKERMLEEENGNMYRWIQDHRVAMEYQHA 100
                     SV KVR RKNEL+QQQL+NL RK RMLEE+N NMYRW+ +HR AME+Q A
Sbjct: 123 LDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQQA 182

Query: 101 TLEAKPVEHQQVLDQFPFC---GE-----------PSSVLQLGTIHSQIH-SYHLQLAQP 145
            ++ KP E+QQ ++Q   C   GE           P+SVLQL T+ S+I  +Y+LQLAQP
Sbjct: 183 GIDTKPGEYQQFIEQLQ-CYKPGEYQQFLEQQQQQPNSVLQLATLPSEIDPTYNLQLAQP 241

Query: 146 NLQGS 150
           NLQ  
Sbjct: 242 NLQND 246


>AT5G23260.1 | Symbols: TT16, ABS, AGL32 | TT16 (TRANSPARENT
           TESTA16); transcription factor | chr5:7836442-7838340
           FORWARD
          Length = 247

 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 100/185 (54%), Gaps = 42/185 (22%)

Query: 2   RMQQIIERYQKVKGTSIPEH---------------------DSRMKRYMGEDMSSIPFXX 40
           RM Q+I+RY    G  +P+H                     + R++ + G D++SIP   
Sbjct: 63  RMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNE 122

Query: 41  XXXXXXXXXRSVAKVRNRKNELLQQQLDNLHRKERMLEEENGNMYRWIQDHRVAMEYQHA 100
                     SV KVR RK     QQL+NL RK RMLEE+N NMYRW+ +HR AME+Q A
Sbjct: 123 LDGLERQLEHSVLKVRERK-----QQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQQA 177

Query: 101 TLEAKPVEHQQVLDQFPFC---GE-----------PSSVLQLGTIHSQIH-SYHLQLAQP 145
            ++ KP E+QQ ++Q   C   GE           P+SVLQL T+ S+I  +Y+LQLAQP
Sbjct: 178 GIDTKPGEYQQFIEQLQ-CYKPGEYQQFLEQQQQQPNSVLQLATLPSEIDPTYNLQLAQP 236

Query: 146 NLQGS 150
           NLQ  
Sbjct: 237 NLQND 241


>AT5G23260.3 | Symbols: TT16, ABS | TT16 (TRANSPARENT TESTA16);
           transcription factor | chr5:7836442-7838340 FORWARD
          Length = 238

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 92/185 (49%), Gaps = 51/185 (27%)

Query: 2   RMQQIIERYQKVKGTSIPEH---------------------DSRMKRYMGEDMSSIPFXX 40
           RM Q+I+RY    G  +P+H                     + R++ + G D++SIP   
Sbjct: 63  RMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNE 122

Query: 41  XXXXXXXXXRSVAKVRNRKNELLQQQLDNLHRKERMLEEENGNMYRWIQDHRVAMEYQHA 100
                     SV KVR               RK RMLEE+N NMYRW+ +HR AME+Q A
Sbjct: 123 LDGLERQLEHSVLKVR--------------ERKRRMLEEDNNNMYRWLHEHRAAMEFQQA 168

Query: 101 TLEAKPVEHQQVLDQFPFC---GE-----------PSSVLQLGTIHSQIH-SYHLQLAQP 145
            ++ KP E+QQ ++Q   C   GE           P+SVLQL T+ S+I  +Y+LQLAQP
Sbjct: 169 GIDTKPGEYQQFIEQLQ-CYKPGEYQQFLEQQQQQPNSVLQLATLPSEIDPTYNLQLAQP 227

Query: 146 NLQGS 150
           NLQ  
Sbjct: 228 NLQND 232