Jatropha Genome Database

JcCB0234411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234411.10 - phase: 0 /pseudo
         (80 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34460.3 | Symbols: AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PR...    69   5e-13
AT4G34460.1 | Symbols: AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PR...    69   5e-13
AT4G34460.4 | Symbols: AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PR...    63   4e-11

>AT4G34460.3 | Symbols: AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING
          PROTEIN BETA 1); GTPase/ nucleotide binding / protein
          binding | chr4:16477586-16479266 REVERSE
          Length = 347

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 43/75 (57%), Gaps = 7/75 (9%)

Query: 1  MSVAELKARHVAATETVNXXXXXXXXXXXXXXXXXXXXXXVAVAGYARAQGKPPVSFGPT 60
          MSV+ELK RH  ATETVN                        VA Y+ AQG+  VSFG T
Sbjct: 1  MSVSELKERHAVATETVNNLRDQLRQRRLQLLDTD-------VARYSAAQGRTRVSFGAT 53

Query: 61 DLVCCRTLQGHTGKV 75
          DLVCCRTLQGHTGKV
Sbjct: 54 DLVCCRTLQGHTGKV 68


>AT4G34460.1 | Symbols: AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING
          PROTEIN BETA 1); GTPase/ nucleotide binding / protein
          binding | chr4:16477393-16479266 REVERSE
          Length = 377

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 43/75 (57%), Gaps = 7/75 (9%)

Query: 1  MSVAELKARHVAATETVNXXXXXXXXXXXXXXXXXXXXXXVAVAGYARAQGKPPVSFGPT 60
          MSV+ELK RH  ATETVN                        VA Y+ AQG+  VSFG T
Sbjct: 1  MSVSELKERHAVATETVNNLRDQLRQRRLQLLDTD-------VARYSAAQGRTRVSFGAT 53

Query: 61 DLVCCRTLQGHTGKV 75
          DLVCCRTLQGHTGKV
Sbjct: 54 DLVCCRTLQGHTGKV 68


>AT4G34460.4 | Symbols: AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING
          PROTEIN BETA 1); GTPase/ nucleotide binding / protein
          binding | chr4:16477393-16479266 REVERSE
          Length = 372

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 39/75 (52%), Gaps = 12/75 (16%)

Query: 1  MSVAELKARHVAATETVNXXXXXXXXXXXXXXXXXXXXXXVAVAGYARAQGKPPVSFGPT 60
          MSV+ELK RH  ATETVN                              AQG+  VSFG T
Sbjct: 1  MSVSELKERHAVATETVNNLRDQLRQRRLQLLDTDA------------AQGRTRVSFGAT 48

Query: 61 DLVCCRTLQGHTGKV 75
          DLVCCRTLQGHTGKV
Sbjct: 49 DLVCCRTLQGHTGKV 63