Jatropha Genome Database

JcCB0231591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231591.10 + phase: 1 /pseudo/partial
         (158 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A...   137   2e-33
AT3G18090.1 | Symbols: NRPD2B | NRPD2b; DNA binding / DNA-direct...   137   3e-33

>AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A; DNA
            binding / DNA-directed RNA polymerase |
            chr3:8567971-8573819 REVERSE
          Length = 1172

 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 100/166 (60%), Gaps = 16/166 (9%)

Query: 1    EKVCNDRTGEMVHSLIFMGPTFYQQLVHMA*DKVKFTQHGAC-PSTYQAVCCRPEAFWWY 59
            E+V N R+GEM+ S+IFMGPTFYQ+LVHM+ DKVKF   G   P T Q V  R       
Sbjct: 1015 ERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRF---- 1070

Query: 60   QVW*DGA*LPHSSR-CICKPA*ATFYSQRL--LADAYL----PDCKNFTNVIERTVPQSR 112
                 G       R C+     +    +RL  L+D+        CK + NVIERT    R
Sbjct: 1071 ----GGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGR 1126

Query: 113  KIKAPYCRICESADDTVKVNLPYGAKVLCQELFSMGISLKFETQLC 158
            KI+ PYCR+C S+D  V+V +PYGAK+LCQELFSMGI+L F+T+LC
Sbjct: 1127 KIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1172


>AT3G18090.1 | Symbols: NRPD2B | NRPD2b; DNA binding / DNA-directed
            RNA polymerase/ ribonucleoside binding |
            chr3:6195323-6200204 FORWARD
          Length = 1055

 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 102/167 (61%), Gaps = 18/167 (10%)

Query: 1    EKVCNDRTGEMVHSLIFMGPTFYQQLVHMA*DKVKFTQHGAC-PSTYQAVCCRPE--AFW 57
            E+V N R+GEM+ SLIFMGPTFYQ+LVHM+ +KVKF   G   P T Q V  R       
Sbjct: 898  ERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIR 957

Query: 58   WYQVW*DGA*LPHSSRCICKPA*ATFYSQRL--LADAYL----PDCKNFTNVIERTVPQS 111
            + ++  D         C+     +    +RL  L+D+        CK + NVIERT    
Sbjct: 958  FGEMERD---------CLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSG 1008

Query: 112  RKIKAPYCRICESADDTVKVNLPYGAKVLCQELFSMGISLKFETQLC 158
            RKI+ PYCR+C S+D  V+V +PYGAK+LCQELFSMGI+L F+T+LC
Sbjct: 1009 RKIRGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1055