Jatropha Genome Database

JcCB0231181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231181.20 - phase: 1 /partial
         (133 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19860.1 | Symbols:  | zinc finger (CCCH-type) family protein...   114   1e-26
AT5G66270.1 | Symbols:  | zinc finger (CCCH-type) family protein...    67   4e-12
AT3G51180.1 | Symbols:  | zinc finger (CCCH-type) family protein...    57   3e-09

>AT1G19860.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr1:6891654-6894400 REVERSE
          Length = 413

 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/114 (53%), Positives = 77/114 (67%), Gaps = 15/114 (13%)

Query: 32  VKDVNYYKNLIQQHGGERQETP--HQYSSRYSHQIGS--NPELVNP-----KSRDAKPKI 82
            +D +YYKNLIQQHGG+RQETP       RY+ Q G   NPE+VN      + RD+KPKI
Sbjct: 300 ARDASYYKNLIQQHGGDRQETPPVQHLGYRYNLQPGGGPNPEMVNSSNNNQRPRDSKPKI 359

Query: 83  MKPCIYFNSSRGCRHGANCAYQHDTSSPQRSS------SIPEVQNAKRMKMDRE 130
           MK C+YFNS+RGCRHGANC YQHD +  Q  +      +  ++QNAKRM+ DR+
Sbjct: 360 MKACMYFNSARGCRHGANCMYQHDATPYQPRNLNNGNINTSDMQNAKRMRFDRD 413


>AT5G66270.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr5:26473507-26475566 REVERSE
          Length = 449

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 15/99 (15%)

Query: 32  VKDVNYYKNLIQQHGGERQETPHQ--YSSRYSHQIGSNPELVNPKSRDAKPKIMKPCIYF 89
           VKD++Y+KNLI++HG  +  T     Y  R  H+            +  K +I KPC+YF
Sbjct: 361 VKDLDYFKNLIREHGAVKPATTETNNYKGRVDHK------------KIVKVRIQKPCMYF 408

Query: 90  NSSRGCRHGANCAYQHDTSSPQRSS-SIPEVQNAKRMKM 127
           N  +GCR G +C Y HD+S    +  + P    AKR+K 
Sbjct: 409 NRPKGCRMGESCLYLHDSSKRLWTDVAPPHFPRAKRLKF 447


>AT3G51180.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr3:19013720-19016042 FORWARD
          Length = 521

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 13/98 (13%)

Query: 32  VKDVNYYKNLIQQHGGERQETPHQYSSRYSHQIGSNPELVNPKSRDAKPKIMKPCIYFNS 91
           +K ++Y+KNLI++HG +  ET     ++Y  Q G    + N +  D   KI + CIYF +
Sbjct: 431 MKGLDYFKNLIREHGTDNHET-----NQYHSQTG----IFNGRI-DNNNKIHQQCIYFGT 480

Query: 92  SRGCRHGANCAYQHDTSSPQRSSSIPEVQNAKRMKMDR 129
           + GC  G +C Y HD   P   ++ P    AKRMK  R
Sbjct: 481 ANGCNMGDSCTYVHDRYRPNFEAAAPR---AKRMKFGR 515