Jatropha Genome Database

JcCB0231181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231181.10 - phase: 0 
         (236 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39600.1 | Symbols:  | unknown protein | chr5:15854188-158547...   207   6e-54

>AT5G39600.1 | Symbols:  | unknown protein | chr5:15854188-15854771
           REVERSE
          Length = 127

 Score =  207 bits (526), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 105/121 (86%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQVLVKRRTDDHPPQITVTF 60
           MLKFLSKVRIEFN LDPR+ASC+EFLAQCNARKAKESNP CQVLVKRRTD+ PPQITVTF
Sbjct: 1   MLKFLSKVRIEFNTLDPRLASCVEFLAQCNARKAKESNPNCQVLVKRRTDEQPPQITVTF 60

Query: 61  VNGVEEVFDGTKIPAQTIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHMPAPGTKV 120
           VNGVEE FD     AQ+IR MIL+KGQ LETEQMFREAGE+WPVIIP+EEL   APG K 
Sbjct: 61  VNGVEEAFDAAATSAQSIRKMILDKGQYLETEQMFREAGEQWPVIIPDEELLQEAPGVKP 120

Query: 121 R 121
           R
Sbjct: 121 R 121