Jatropha Genome Database

JcCB0231061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231061.20 - phase: 0 /partial/short
         (43 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06830.1 | Symbols:  | unknown protein | chr5:2116882-2119559...    75   1e-14

>AT5G06830.1 | Symbols:  | unknown protein | chr5:2116882-2119559
           REVERSE
          Length = 549

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/43 (83%), Positives = 42/43 (97%)

Query: 1   EAALAKTRELKKLCESTLSSMFDGRPVNIIGEINTLLNSGVNA 43
           EAAL+KTRELK+LCE++LSSMFDGRPVNI GEINTLLN+GV+A
Sbjct: 507 EAALSKTRELKELCETSLSSMFDGRPVNIRGEINTLLNAGVSA 549