Jatropha Genome Database

JcCB0230941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0230941.10 - phase: 1 /pseudo/partial
         (149 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78800.1 | Symbols:  | glycosyl transferase family 1 protein ...   225   8e-60

>AT1G78800.1 | Symbols:  | glycosyl transferase family 1 protein |
           chr1:29625859-29627941 REVERSE
          Length = 403

 Score =  225 bits (573), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 121/141 (85%), Gaps = 1/141 (0%)

Query: 10  LGGLKSLAEREGVSDRVSFITSCSTVERNELLSQCLSVIYTPKDEHFGIVPLEAMAAYKP 69
           L  L+SLAE+EGVSDRV+FITSCST ERNELLS CL V+YTP DEHFGIVPLEAMAAYKP
Sbjct: 263 LEELRSLAEKEGVSDRVNFITSCSTAERNELLSSCLCVLYTPTDEHFGIVPLEAMAAYKP 322

Query: 70  VIACNSGGPTETVKDGVTGFLCESTPKAFSLAMAKLIQDPQMAKRMGEQARQHVTESFST 129
           VIACNSGGP ETVK+GVTG+LCE TP+ FS AMA+ I++P++A RMG +AR HV ESFS 
Sbjct: 323 VIACNSGGPVETVKNGVTGYLCEPTPEDFSSAMARFIENPELANRMGAEARNHVVESFSV 382

Query: 130 KIFGQHLNQYLVD-IASIKED 149
           K FGQ LNQYLVD ++S KED
Sbjct: 383 KTFGQKLNQYLVDVVSSPKED 403