Jatropha Genome Database

JcCB0229021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0229021.10 + phase: 0 /pseudo/partial
         (307 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01370.1 | Symbols:  | unknown protein | chr5:152575-154295 F...    58   6e-09

>AT5G01370.1 | Symbols:  | unknown protein | chr5:152575-154295
           FORWARD
          Length = 427

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 25/151 (16%)

Query: 44  RLMGLDS-LPDTNRI---PTNGNTVTRSRSVNFMDYLFEFDL----------SQAHHRRV 89
           +LMGLD   P + R      +G+ VTRS+SVNFMDY+ +              Q   RRV
Sbjct: 83  KLMGLDHPAPGSKRFRYFDDSGSAVTRSKSVNFMDYILKGHEEEEENEDEKDGQRQCRRV 142

Query: 90  KTSLSFRD-VPTL------QNQKNNDFFLLYLDNIEKTKKTRPNKFRKAEVGLEESNKKE 142
           K S+SFR+ VPT         QK +DF LLYLD +++ ++   +         E+  +  
Sbjct: 143 KASVSFREIVPTSARWSSNNQQKKHDFLLLYLDKLDEKRELVGSSSFSRSKRFEKVVEDS 202

Query: 143 EKGAVDVRKEKKNQRNNNLKIS-KLKDEPRK 172
           +K  +     KK +   N K++ K KDEPRK
Sbjct: 203 KKPPLPPSAPKKKE---NEKVAKKFKDEPRK 230