Jatropha Genome Database

JcCB0227741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0227741.10 - phase: 2 /partial
         (58 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40650.1 | Symbols: SDH2-2 | SDH2-2; electron carrier/ succin...   105   5e-24
AT3G27380.2 | Symbols: SDH2-1 | SDH2-1; electron carrier/ succin...   104   1e-23
AT3G27380.1 | Symbols: SDH2-1 | SDH2-1; electron carrier/ succin...   104   1e-23
AT5G65165.1 | Symbols: SDH2-3 | SDH2-3; electron carrier/ succin...    69   7e-13

>AT5G40650.1 | Symbols: SDH2-2 | SDH2-2; electron carrier/ succinate
           dehydrogenase | chr5:16281462-16283296 FORWARD
          Length = 280

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 48/56 (85%), Positives = 52/56 (92%)

Query: 1   WISDSRDEYTNERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIMNIKRLELVG 56
           WISDSRDEYT ERLEAI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK+L+  G
Sbjct: 225 WISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQKSG 280


>AT3G27380.2 | Symbols: SDH2-1 | SDH2-1; electron carrier/ succinate
           dehydrogenase | chr3:10131209-10132673 REVERSE
          Length = 279

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/53 (88%), Positives = 51/53 (96%)

Query: 1   WISDSRDEYTNERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIMNIKRLE 53
           WISDSRDEYT ERLEAI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK+L+
Sbjct: 226 WISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 278


>AT3G27380.1 | Symbols: SDH2-1 | SDH2-1; electron carrier/ succinate
           dehydrogenase | chr3:10131209-10132673 REVERSE
          Length = 279

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/53 (88%), Positives = 51/53 (96%)

Query: 1   WISDSRDEYTNERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIMNIKRLE 53
           WISDSRDEYT ERLEAI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK+L+
Sbjct: 226 WISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 278


>AT5G65165.1 | Symbols: SDH2-3 | SDH2-3; electron carrier/ succinate
           dehydrogenase | chr5:26034515-26035922 REVERSE
          Length = 309

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 1   WISDSRDEYTNERLEAIND-EFKLYRCHTILNCARACPKGLNPGKQIMNIKRLELVG 56
           WISDSRDEY  ERL+AI + E K+YRC  I NC   CPKGLNP   I+ +K   L+ 
Sbjct: 244 WISDSRDEYREERLQAITESETKVYRCRAIKNCTATCPKGLNPASAILKMKSKHLLS 300