Jatropha Genome Database

JcCB0226331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0226331.10 - phase: 0 /partial
         (227 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70210.1 | Symbols: CYCD1;1 | CYCD1;1 (CYCLIN D1;1); cyclin-d...   248   2e-66
AT2G22490.1 | Symbols: CYCD2;1, ATCYCD2;1 | CYCD2;1 (Cyclin D2;1...   117   6e-27
AT4G34160.1 | Symbols: CYCD3;1, CYCD3 | CYCD3;1 (CYCLIN D3;1); c...   111   3e-25
AT5G65420.1 | Symbols: CYCD4;1 | CYCD4;1 (CYCLIN D4;1); cyclin-d...   109   1e-24
AT3G50070.1 | Symbols: CYCD3;3 | CYCD3;3 (CYCLIN D3;3); cyclin-d...   109   1e-24
AT5G67260.1 | Symbols: CYCD3;2 | CYCD3;2 (CYCLIN D3;2); cyclin-d...   102   2e-22
AT5G10440.1 | Symbols: CYCD4;2 | CYCD4;2 (cyclin d4;2); cyclin-d...   100   6e-22
AT4G37630.1 | Symbols: CYCD5;1 | CYCD5;1 (cyclin d5;1); cyclin-d...    92   4e-19
AT4G37630.2 | Symbols: CYCD5;1 | CYCD5;1 (cyclin d5;1); cyclin-d...    91   4e-19
AT4G03270.1 | Symbols: CYCD6;1 | CYCD6;1 (Cyclin D6;1); cyclin-d...    80   1e-15
AT5G02110.1 | Symbols: CYCD7;1, CYCD7 | CYCD7;1 (CYCLIN D7;1); c...    59   2e-09

>AT1G70210.1 | Symbols: CYCD1;1 | CYCD1;1 (CYCLIN D1;1);
           cyclin-dependent protein kinase regulator |
           chr1:26440015-26441980 FORWARD
          Length = 339

 Score =  248 bits (634), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/221 (57%), Positives = 154/221 (69%), Gaps = 5/221 (2%)

Query: 1   QTKGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWR 60
           +T GWPMQLL+VACLSLAAKMEE LVPSL D QV G KY+FE +TI+RMELLVLSVLDWR
Sbjct: 121 ETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWR 180

Query: 61  LRSVTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXXXXX 120
           LRSVTPF F+ FFA K+D S T++GF IS A EIILSN++EASFLEYWPSS         
Sbjct: 181 LRSVTPFDFISFFAYKIDPSGTFLGFFISHATEIILSNIKEASFLEYWPSSIAAAAILCV 240

Query: 121 XNEIPKL-SLVNP-ELAESWCDGLSKEKIISCYQLMQDLVLDNSRRKPPKVLPLLRVTIR 178
            NE+P L S+VNP E  E+WCDGLSKEKI+ CY+LM+ + ++N+R   PKV+  LRV++R
Sbjct: 241 ANELPSLSSVVNPHESPETWCDGLSKEKIVRCYRLMKAMAIENNRLNTPKVIAKLRVSVR 300

Query: 179 ARMRXXXXXXXXXXXXXXXXXXYKRRKLNNCLWVDDDKGNS 219
           A                      KRRKL+   WV D+   S
Sbjct: 301 A---SSTLTRPSDESSFSSSSPCKRRKLSGYSWVGDETSTS 338


>AT2G22490.1 | Symbols: CYCD2;1, ATCYCD2;1 | CYCD2;1 (Cyclin D2;1);
           cyclin-dependent protein kinase regulator/ protein
           binding | chr2:9554157-9555873 REVERSE
          Length = 361

 Score =  117 bits (293), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 103/179 (57%), Gaps = 3/179 (1%)

Query: 1   QTKGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWR 60
           + K W  QLL+V+CLSLA+KMEE  VP ++DLQVE  K++FE +TI+RMELLV++ L+WR
Sbjct: 136 KDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWR 195

Query: 61  LRSVTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXXXXX 120
           L+++TPFSF+D+F  K+  S      LI R+   IL+  +   FL++ PS          
Sbjct: 196 LQALTPFSFIDYFVDKI--SGHVSENLIYRSSRFILNTTKAIEFLDFRPSEIAAAAAVSV 253

Query: 121 XNEIPKLSLVNPELAESWCDGLSKEKIISCYQLMQDLVLDNSRRKPPKVLPLLRVTIRA 179
                +   ++ E A S    + +E++  C  LM+ L  + + R         RV +RA
Sbjct: 254 SI-SGETECIDEEKALSSLIYVKQERVKRCLNLMRSLTGEENVRGTSLSQEQARVAVRA 311


>AT4G34160.1 | Symbols: CYCD3;1, CYCD3 | CYCD3;1 (CYCLIN D3;1);
           cyclin-dependent protein kinase regulator/ protein
           binding | chr4:16357903-16359304 FORWARD
          Length = 376

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 93/158 (58%)

Query: 3   KGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLR 62
           K W +QL+SVACLSLAAK+EE  VP LLD QVE  KY+FE +TI+RMELL+LS L+W++ 
Sbjct: 128 KPWMLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKMH 187

Query: 63  SVTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXXXXXXN 122
            +TP SF+D    +L   +      +++   ++LS + ++ F+ Y PS            
Sbjct: 188 LITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDSRFVGYLPSVVAAATMMRIIE 247

Query: 123 EIPKLSLVNPELAESWCDGLSKEKIISCYQLMQDLVLD 160
           ++     ++ +        L+KEK+ +CY L+  L +D
Sbjct: 248 QVDPFDPLSYQTNLLGVLNLTKEKVKTCYDLILQLPVD 285


>AT5G65420.1 | Symbols: CYCD4;1 | CYCD4;1 (CYCLIN D4;1);
           cyclin-dependent protein kinase regulator |
           chr5:26141592-26143750 REVERSE
          Length = 308

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 10/173 (5%)

Query: 3   KGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLR 62
           KGW +QLL+VACLSLAAK+EE  VP L+DLQV   +++FE ++++RMELLVL+ L WRLR
Sbjct: 119 KGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLR 178

Query: 63  SVTPFSFLDFF-----ACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXX 117
           ++TP S++ +F      C  + S+T    LISR+ ++I S  +   FLE+ PS       
Sbjct: 179 AITPCSYIRYFLRKMSKCDQEPSNT----LISRSLQVIASTTKGIDFLEFRPSEVAAAVA 234

Query: 118 XXXXNEIPKLSLVNPELAESWCDGLSKEKIISCYQLMQDLVLDNSRRKPPKVL 170
                E+ ++   N   +  +   L KE++    ++++    D   + P  VL
Sbjct: 235 LSVSGELQRVHFDNSSFSPLF-SLLQKERVKKIGEMIESDGSDLCSQTPNGVL 286


>AT3G50070.1 | Symbols: CYCD3;3 | CYCD3;3 (CYCLIN D3;3);
           cyclin-dependent protein kinase | chr3:18565322-18566669
           REVERSE
          Length = 361

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 96/166 (57%), Gaps = 10/166 (6%)

Query: 3   KGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLR 62
           K W  QL ++ACLSLAAK+EE  VP LLD QVE A+Y+FE +TI+RMELLVLS LDWR+ 
Sbjct: 127 KPWMSQLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMH 186

Query: 63  SVTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXXXXXXN 122
            VTP SF D    +    S +    +SR + ++LS + ++ FL + PS           +
Sbjct: 187 PVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSPS---VLATAIMVS 243

Query: 123 EIPKLSLVNPELAESWCDGLSK---EKIISCYQLMQDLVLDNSRRK 165
            I  L + +  + +S    L K   EK+  CY+    LVLD+S  K
Sbjct: 244 VIRDLKMCDEAVYQSQLMTLLKVDSEKVNKCYE----LVLDHSPSK 285


>AT5G67260.1 | Symbols: CYCD3;2 | CYCD3;2 (CYCLIN D3;2);
           cyclin-dependent protein kinase | chr5:26836313-26837665
           FORWARD
          Length = 367

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 86/152 (56%)

Query: 3   KGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLR 62
           K W  QL++VA LSLAAK+EE  VP LLDLQVE A+Y+FE +TI+RMELL+LS L WR+ 
Sbjct: 137 KPWMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRMH 196

Query: 63  SVTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXXXXXXN 122
            VTP SF D    +  S          + + +++S + +  F+ Y+PS            
Sbjct: 197 PVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRFMRYFPSVLATAIMILVFE 256

Query: 123 EIPKLSLVNPELAESWCDGLSKEKIISCYQLM 154
           E+     V  +   +    +++EK+  CY+L+
Sbjct: 257 ELKPCDEVEYQSQITTLLKVNQEKVNECYELL 288


>AT5G10440.1 | Symbols: CYCD4;2 | CYCD4;2 (cyclin d4;2);
           cyclin-dependent protein kinase | chr5:3280611-3282342
           REVERSE
          Length = 298

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 1/109 (0%)

Query: 3   KGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLR 62
           K W +QLL+VACLSLAAK+EE  VP L+ LQV    ++FE ++++RMELLVL+VL WRLR
Sbjct: 110 KAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAPMFVFEAKSVQRMELLVLNVLRWRLR 169

Query: 63  SVTPFSFLDFFACKLDSSSTY-IGFLISRAKEIILSNMQEASFLEYWPS 110
           +VTP S++ +F  K++         L++R+ ++I S  +   FLE+  S
Sbjct: 170 AVTPCSYVRYFLSKINGYDQEPHSRLVTRSLQVIASTTKGIDFLEFRAS 218


>AT4G37630.1 | Symbols: CYCD5;1 | CYCD5;1 (cyclin d5;1);
           cyclin-dependent protein kinase | chr4:17679497-17680788
           FORWARD
          Length = 323

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 3/107 (2%)

Query: 3   KGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLR 62
           + W M+LLSVACLSLAAKMEE +VP L     +   ++F+P  IR+ ELL+LS LDW++ 
Sbjct: 115 ETWAMRLLSVACLSLAAKMEERIVPGLSQYP-QDHDFVFKPDVIRKTELLILSTLDWKMN 173

Query: 63  SVTPFSFLDFFACKL--DSSSTYIGFLISRAKEIILSNMQEASFLEY 107
            +TPF + ++F  K+  D+ S     ++ R+ + +L+  +E SF EY
Sbjct: 174 LITPFHYFNYFLAKISQDNHSVSKDLVLLRSSDSLLALTKEISFTEY 220


>AT4G37630.2 | Symbols: CYCD5;1 | CYCD5;1 (cyclin d5;1);
           cyclin-dependent protein kinase | chr4:17679497-17680788
           FORWARD
          Length = 321

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 3/107 (2%)

Query: 3   KGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLR 62
           + W M+LLSVACLSLAAKMEE +VP L     +   ++F+P  IR+ ELL+LS LDW++ 
Sbjct: 113 ETWAMRLLSVACLSLAAKMEERIVPGLSQYP-QDHDFVFKPDVIRKTELLILSTLDWKMN 171

Query: 63  SVTPFSFLDFFACKL--DSSSTYIGFLISRAKEIILSNMQEASFLEY 107
            +TPF + ++F  K+  D+ S     ++ R+ + +L+  +E SF EY
Sbjct: 172 LITPFHYFNYFLAKISQDNHSVSKDLVLLRSSDSLLALTKEISFTEY 218


>AT4G03270.1 | Symbols: CYCD6;1 | CYCD6;1 (Cyclin D6;1);
           cyclin-dependent protein kinase | chr4:1432375-1433691
           REVERSE
          Length = 302

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 7/160 (4%)

Query: 1   QTKGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWR 60
           Q+K W ++L+S++C+SL+AKM +  + S+ DL VEG    F+ + I RME ++L  L WR
Sbjct: 96  QSKPWILKLISLSCVSLSAKMRKPDM-SVSDLPVEGE--FFDAQMIERMENVILGALKWR 152

Query: 61  LRSVTPFSFLDFFAC----KLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXX 116
           +RSVTPFSFL FF      K +        L S+  ++  S   + SFLE+ PS      
Sbjct: 153 MRSVTPFSFLAFFISLFELKEEDPLLLKHSLKSQTSDLTFSLQHDISFLEFKPSVIAGAA 212

Query: 117 XXXXXNEIPKLSLVNPELAESWCDGLSKEKIISCYQLMQD 156
                 E+  L         + C  ++K++++ CY+ +Q+
Sbjct: 213 LLFASFELCPLQFPCFSNRINQCTYVNKDELMECYKAIQE 252


>AT5G02110.1 | Symbols: CYCD7;1, CYCD7 | CYCD7;1 (CYCLIN D7;1);
           cyclin-dependent protein kinase | chr5:417087-418553
           FORWARD
          Length = 341

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 87/165 (52%), Gaps = 11/165 (6%)

Query: 4   GWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLRS 63
            W ++L++V  LS+A+K  E   P L +L++EG  ++F   T+ +MEL++L  L+WR+ +
Sbjct: 120 NWMVELVAVTSLSIASKFNEVTTPLLEELEMEGLTHMFHVNTVAQMELIILKALEWRVNA 179

Query: 64  VTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXX-XXXXN 122
           VT ++F      K+     ++  +++R    +L  + +   L+Y PS            +
Sbjct: 180 VTSYTFSQTLVSKIGMVGDHM--IMNRITNHLLDVICDLKMLQYPPSVVATAAIWILMED 237

Query: 123 EIPKLSLVNPELAESWCDGLSKEKIISCYQLMQDLVLDN--SRRK 165
           ++ + S++N        +   KEKI+ C   M++  +D+  SRR+
Sbjct: 238 KVCRESIMN------LFEQNHKEKIVKCVDGMKNRDIDHQSSRRR 276