Jatropha Genome Database
- JcCB0224951.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0224951.10 - phase: 0 /partial
(205 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G03290.1 | Symbols: | isocitrate dehydrogenase, putative / N... 374 e-104
AT3G09810.1 | Symbols: | isocitrate dehydrogenase, putative / N... 347 2e-96
AT4G35260.1 | Symbols: IDH1 | IDH1 (ISOCITRATE DEHYDROGENASE 1);... 213 7e-56
AT2G17130.1 | Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE SUB... 206 1e-53
AT4G35650.1 | Symbols: | isocitrate dehydrogenase, putative / N... 199 1e-51
AT2G17130.2 | Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE SUB... 196 1e-50
AT1G32480.1 | Symbols: | oxidoreductase/ oxidoreductase, acting... 148 3e-36
AT1G31180.1 | Symbols: | 3-isopropylmalate dehydrogenase, chlor... 51 5e-07
AT5G14200.2 | Symbols: | 3-isopropylmalate dehydrogenase, chlor... 50 1e-06
AT5G14200.1 | Symbols: | 3-isopropylmalate dehydrogenase, chlor... 50 1e-06
AT5G14200.3 | Symbols: | 3-isopropylmalate dehydrogenase, chlor... 50 1e-06
>AT5G03290.1 | Symbols: | isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative | chr5:794043-795939
FORWARD
Length = 374
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/193 (92%), Positives = 184/193 (95%)
Query: 1 VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
VF A VPI WEEHYVGTEIDPRT+SFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL
Sbjct: 65 VFTTAGVPIEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 124
Query: 61 TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
TLRKELNLYANVRPCYSLPGYKTRYDDV+LITIRENTEGEYSGLEHQVVRGVVESLKIIT
Sbjct: 125 TLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVRGVVESLKIIT 184
Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
RQASLRVAEYAF YAK HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEI YEEVVI
Sbjct: 185 RQASLRVAEYAFLYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI 244
Query: 181 DNCCMMVCESLSL 193
DNCCMM+ ++ +L
Sbjct: 245 DNCCMMLVKNPAL 257
>AT3G09810.1 | Symbols: | isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative |
chr3:3008753-3011070 FORWARD
Length = 374
Score = 347 bits (891), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 160/193 (82%), Positives = 180/193 (93%)
Query: 1 VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
VF AA+V I W+E +VGTE+DPRT SFLTW++L+SV +NKVGLKGPMATPIGKGHRSLNL
Sbjct: 65 VFTAADVVIDWDEQFVGTEVDPRTNSFLTWDNLQSVLKNKVGLKGPMATPIGKGHRSLNL 124
Query: 61 TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
TLRKELNLYANVRPCYSLPGYKTRYDDV+LITIRENTEGEYSGLEHQVV+GVVESLKIIT
Sbjct: 125 TLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVKGVVESLKIIT 184
Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
R+AS+RVAEYAF YAK HGR++VSAIHKANIMQKTDGLFL+CC EVA KYPEI YE+VVI
Sbjct: 185 RKASMRVAEYAFLYAKTHGRKKVSAIHKANIMQKTDGLFLQCCDEVAAKYPEIYYEKVVI 244
Query: 181 DNCCMMVCESLSL 193
DNCCMM+ ++ +L
Sbjct: 245 DNCCMMLVKNPAL 257
>AT4G35260.1 | Symbols: IDH1 | IDH1 (ISOCITRATE DEHYDROGENASE 1);
isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting
on the CH-OH group of donors, NAD or NADP as acceptor |
chr4:16774494-16776233 REVERSE
Length = 367
Score = 213 bits (542), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 142/187 (75%), Gaps = 5/187 (2%)
Query: 1 VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
V A PI +E++ V E+ S + E +ES+R+NKV LKG + TP+G G SLN+
Sbjct: 59 VMEAMHAPIFFEKYDVHGEM-----SRVPPEVMESIRKNKVCLKGGLKTPVGGGVSSLNV 113
Query: 61 TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
LRKEL+L+A++ C++LPG TR+++V+++ IRENTEGEY+GLEH+VV GVVESLK+IT
Sbjct: 114 QLRKELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVIT 173
Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
+ S R+A+YAF YA + R++V+A+HKANIM+ DGLFL+ CREVA+KYP I Y E+++
Sbjct: 174 KFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPSITYNEIIV 233
Query: 181 DNCCMMV 187
DNCCM +
Sbjct: 234 DNCCMQL 240
>AT2G17130.1 | Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE
SUBUNIT 2); isocitrate dehydrogenase (NAD+)/
oxidoreductase, acting on the CH-OH group of donors, NAD
or NADP as acceptor | chr2:7461062-7462466 REVERSE
Length = 367
Score = 206 bits (523), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 138/187 (73%), Gaps = 5/187 (2%)
Query: 1 VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
V A P+ +E V ++ E L ES+++NKV LKG + TP+G G SLN+
Sbjct: 59 VMEAMHAPVYFEPFEVHGDMKSLPEGLL-----ESIKKNKVCLKGGLKTPVGGGVSSLNV 113
Query: 61 TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
LRKEL+L+A++ C++LPG +R+++V+++ IRENTEGEY+GLEH+VV GVVESLK+IT
Sbjct: 114 NLRKELDLFASLVNCFNLPGLASRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVIT 173
Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
+ S R+A+YAF YA + R++V+A+HKANIM+ DGLFL+ C+EVA+KYP I Y E+++
Sbjct: 174 KFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCQEVAKKYPSIAYNEIIV 233
Query: 181 DNCCMMV 187
DNCCM +
Sbjct: 234 DNCCMQL 240
>AT4G35650.1 | Symbols: | isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative |
chr4:16908584-16909973 FORWARD
Length = 368
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 136/187 (72%), Gaps = 5/187 (2%)
Query: 1 VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
V A P+ +E + V + E E +ESV+RNKV LKG +ATP+G G SLN+
Sbjct: 60 VMEAMHAPVHFERYEVLGNMRKVPE-----EVIESVKRNKVCLKGGLATPVGGGVSSLNM 114
Query: 61 TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
LRKEL+++A++ C ++PG TR+++V+++ IRENTEGEYSGLEH+VV GVVESLK+IT
Sbjct: 115 QLRKELDIFASLVNCINVPGLVTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVIT 174
Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
+ S R+A YAF YA + R++V+A+HKANIM+ DGLFL+ CREVA+ Y I Y E+++
Sbjct: 175 KFCSERIARYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKHYSGITYNEIIV 234
Query: 181 DNCCMMV 187
DNCCM +
Sbjct: 235 DNCCMQL 241
>AT2G17130.2 | Symbols: IDH2 | IDH2 (ISOCITRATE DEHYDROGENASE
SUBUNIT 2); isocitrate dehydrogenase (NAD+)/
oxidoreductase, acting on the CH-OH group of donors, NAD
or NADP as acceptor | chr2:7461062-7462466 REVERSE
Length = 363
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/187 (49%), Positives = 134/187 (71%), Gaps = 9/187 (4%)
Query: 1 VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
V A P+ +E V ++ E L ES+++NKV LKG + TP+G G SLN+
Sbjct: 59 VMEAMHAPVYFEPFEVHGDMKSLPEGLL-----ESIKKNKVCLKGGLKTPVGGGVSSLNV 113
Query: 61 TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
LRKEL+L+A++ C++LPG +R+++V+++ IRENTEGEY+GLEH+VV GVVESLK +
Sbjct: 114 NLRKELDLFASLVNCFNLPGLASRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKFCS 173
Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
R+A+YAF YA + R++V+A+HKANIM+ DGLFL+ C+EVA+KYP I Y E+++
Sbjct: 174 E----RIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCQEVAKKYPSIAYNEIIV 229
Query: 181 DNCCMMV 187
DNCCM +
Sbjct: 230 DNCCMQL 236
>AT1G32480.1 | Symbols: | oxidoreductase/ oxidoreductase, acting on
the CH-OH group of donors, NAD or NADP as acceptor |
chr1:11741083-11741727 FORWARD
Length = 214
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 123/191 (64%), Gaps = 13/191 (6%)
Query: 1 VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
V A + P+ +E + I + + LTWE ++S+R+NKV L G + + G
Sbjct: 19 VMDAMQAPVYFETYI----IKGKNMNHLTWEVVDSIRKNKVCLNGRVNNSLCGG------ 68
Query: 61 TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKI-I 119
RKEL+L+A++ C++L G +R+++V+++ IRENTEGEY+G EH+VV GV+ES ++ +
Sbjct: 69 -ARKELDLFASLVDCFNLNGQPSRHENVDIVVIRENTEGEYAGREHEVVPGVIESFQVTM 127
Query: 120 TRQASLRVAEYAFHYAKAHGRERVSAIHKANIMQK-TDGLFLKCCREVAEKYPEIKYEEV 178
T+ S R+A+YAF YA R++V+A+H +K D FL+ C+EVA+ YP I Y E+
Sbjct: 128 TKFWSDRIAKYAFEYAHFSKRKKVTAVHNNGKYEKLADAFFLESCQEVAKMYPNITYNEI 187
Query: 179 VIDNCCMMVCE 189
I+NCC+ + E
Sbjct: 188 GINNCCLQLVE 198
>AT1G31180.1 | Symbols: | 3-isopropylmalate dehydrogenase,
chloroplast, putative | chr1:11142843-11144617 REVERSE
Length = 404
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 14/141 (9%)
Query: 60 LTLRKELNLYANVRPCYSLPGY-------KTRYDDVNLITIRENTEGEYSGLEHQVV--- 109
L +R++LN++AN+RP LP K V+++ +RE T G Y G +
Sbjct: 134 LNIRRDLNVFANLRPATVLPQLVDASTLKKEVAQGVDMMIVRELTGGIYFGEPRGITINE 193
Query: 110 --RGVVESLKIITRQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVA 167
V + +I R+A AF A+ R ++ ++ KAN++ + L+ K +A
Sbjct: 194 NGEEVGFNTEIYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLDASI-LWRKRVTALA 251
Query: 168 EKYPEIKYEEVVIDNCCMMVC 188
+YP+++ + +DN M +
Sbjct: 252 SEYPDVELSHMYVDNAAMQLV 272
>AT5G14200.2 | Symbols: | 3-isopropylmalate dehydrogenase,
chloroplast, putative | chr5:4576220-4577615 FORWARD
Length = 300
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 23/163 (14%)
Query: 62 LRKELNLYANVRPCYSLPGY-------KTRYDDVNLITIRENTEGEYSGLEHQVV----- 109
LR++L ++AN+RP LP K + V+++ +RE T G Y G +
Sbjct: 139 LRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENG 198
Query: 110 RGVVESLKIITRQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEK 169
V S +I R+A AF A+ R ++ ++ KAN++ + L+ K +A +
Sbjct: 199 EEVGVSTEIYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLDASI-LWRKRVTALASE 256
Query: 170 YPEIKYEEVVIDNCCM--------MVCESLSLNISVFSFCLGK 204
YP+++ + +DN M ++ +SL + V +CL K
Sbjct: 257 YPDVELSHMYVDNAAMQLIRDPKQVLTQSLPITFLVI-YCLMK 298
>AT5G14200.1 | Symbols: | 3-isopropylmalate dehydrogenase,
chloroplast, putative | chr5:4576220-4578111 FORWARD
Length = 409
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Query: 62 LRKELNLYANVRPCYSLPGY-------KTRYDDVNLITIRENTEGEYSGLEHQVV----- 109
LR++L ++AN+RP LP K + V+++ +RE T G Y G +
Sbjct: 139 LRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENG 198
Query: 110 RGVVESLKIITRQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEK 169
V S +I R+A AF A+ R ++ ++ KAN++ + L+ K +A +
Sbjct: 199 EEVGVSTEIYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLDASI-LWRKRVTALASE 256
Query: 170 YPEIKYEEVVIDNCCMMVC 188
YP+++ + +DN M +
Sbjct: 257 YPDVELSHMYVDNAAMQLI 275
>AT5G14200.3 | Symbols: | 3-isopropylmalate dehydrogenase,
chloroplast, putative | chr5:4576220-4577962 FORWARD
Length = 388
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 62 LRKELNLYANVRPCYSLPGY-------KTRYDDVNLITIRENTEGEYSGLEHQVV----- 109
LR++L ++AN+RP LP K + V+++ +RE T G Y G +
Sbjct: 139 LRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENG 198
Query: 110 RGVVESLKIITRQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEK 169
V S +I R+A AF A+ R ++ ++ KAN++ + L+ K +A +
Sbjct: 199 EEVGVSTEIYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLDASI-LWRKRVTALASE 256
Query: 170 YPEIKYEEVVIDNCCMMV 187
YP+++ + +DN M +
Sbjct: 257 YPDVELSHMYVDNAAMQL 274