Jatropha Genome Database

JcCB0224701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224701.10 + phase: 2 /partial
         (223 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G63970.1 | Symbols: ISPF, MECPS | ISPF; 2-C-methyl-D-erythrit...   247   4e-66
AT1G63970.2 | Symbols: ISPF, MECPS | ISPF; 2-C-methyl-D-erythrit...   223   7e-59

>AT1G63970.1 | Symbols: ISPF, MECPS | ISPF; 2-C-methyl-D-erythritol
           2,4-cyclodiphosphate synthase | chr1:23738923-23740336
           REVERSE
          Length = 231

 Score =  247 bits (630), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 117/136 (86%), Positives = 124/136 (91%)

Query: 88  VDALATSSKGPKSLPFRVGHGFDLHRLEPGYPLIIGGINVPHDRGCEAHSDGDVLLHCVV 147
           V+   TS K  K+LPFR+GHGFDLHRLEPGYPLIIGGI +PHDRGCEAHSDGDVLLHCVV
Sbjct: 60  VNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVV 119

Query: 148 DAILGALGLPDIGQIFPDSDPKWKGAPSSVFIQEAVRLMHEAGYDIGNLDATLILQRPKL 207
           DAILGALGLPDIGQIFPDSDPKWKGA SSVFI+EAVRLM EAGY+IGNLDATLILQRPK+
Sbjct: 120 DAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKI 179

Query: 208 SPHKEAIRENLCKLLG 223
           SPHKE IR NL KLLG
Sbjct: 180 SPHKETIRSNLSKLLG 195


>AT1G63970.2 | Symbols: ISPF, MECPS | ISPF; 2-C-methyl-D-erythritol
           2,4-cyclodiphosphate synthase | chr1:23738923-23740336
           REVERSE
          Length = 223

 Score =  223 bits (568), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 109/136 (80%), Positives = 116/136 (85%), Gaps = 8/136 (5%)

Query: 88  VDALATSSKGPKSLPFRVGHGFDLHRLEPGYPLIIGGINVPHDRGCEAHSDGDVLLHCVV 147
           V+   TS K  K+LPFR+GHGFDLHRLEPGYPLIIGGI +PHDRGCEAHSD        V
Sbjct: 60  VNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSD--------V 111

Query: 148 DAILGALGLPDIGQIFPDSDPKWKGAPSSVFIQEAVRLMHEAGYDIGNLDATLILQRPKL 207
           DAILGALGLPDIGQIFPDSDPKWKGA SSVFI+EAVRLM EAGY+IGNLDATLILQRPK+
Sbjct: 112 DAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKI 171

Query: 208 SPHKEAIRENLCKLLG 223
           SPHKE IR NL KLLG
Sbjct: 172 SPHKETIRSNLSKLLG 187