Jatropha Genome Database

JcCB0224631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224631.10 - phase: 2 /partial
         (262 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02780.1 | Symbols: GA1, ABC33, ATCPS1 | GA1 (GA REQUIRING 1)...   140   8e-34
AT1G79460.1 | Symbols: GA2, KS, ATKS | GA2 (GA REQUIRING 2); ent...    51   8e-07

>AT4G02780.1 | Symbols: GA1, ABC33, ATCPS1 | GA1 (GA REQUIRING 1);
           ent-copalyl diphosphate synthase/ magnesium ion binding
           | chr4:1237881-1244766 REVERSE
          Length = 802

 Score =  140 bits (353), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 147/268 (54%), Gaps = 18/268 (6%)

Query: 1   WYEECNLGAFGVSKRELLYAYYMAAASIFEPERSKERVAWAKTTILLRTIDAYFNDNSNN 60
           WYEE  L  +GV + ELL  YY+AAA+IFE ERS ER+ WAK+++L++ I + F ++S++
Sbjct: 546 WYEENRLSEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESSDS 605

Query: 61  SVEERKDFVQQFKHGVGAPAGLVNGRKLE-----TKTRQELVGIVLGTLNDVSLDALVAH 115
                  F +   +   +     N R +      +     L G+++GTLN +S D  ++H
Sbjct: 606 RRSFSDQFHEYIANARRSDHHF-NDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSH 664

Query: 116 GTDISHSLRHAWEKWLTNWEKEGDRHQGEAELIVKTINLTTGRWVSEELLNY--SSKYER 173
           G D+++ L  +W  W+  W+  GD  +GE EL+VK I L      + +L N+   + + R
Sbjct: 665 GRDVNNLLYLSWGDWMEKWKLYGD--EGEGELMVKMIILMK----NNDLTNFFTHTHFVR 718

Query: 174 FFQLTNRICHQLGHHSKNKVYDRERSTTPEIESDMQELTQLVLQNSSDGMDSNIKQTFFT 233
             ++ NRIC     + K +  D +  T   +E +M ++ +L L  S    D +I  TF  
Sbjct: 719 LAEIINRICLP-RQYLKARRNDEKEKTIKSMEKEMGKMVELALSESDTFRDVSI--TFLD 775

Query: 234 VVKSFYYTAVCDPGTINYHISKVLFEKV 261
           V K+FYY A+C    +  HISKVLF+KV
Sbjct: 776 VAKAFYYFALCG-DHLQTHISKVLFQKV 802


>AT1G79460.1 | Symbols: GA2, KS, ATKS | GA2 (GA REQUIRING 2);
           ent-kaurene synthase | chr1:29890568-29894436 FORWARD
          Length = 785

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 17/144 (11%)

Query: 1   WYEECNLGAFGVSKRELLYAYYMAAASIFEPERSKERVAWAKTTILLRTIDAYFN-DNSN 59
           W  E  L     ++++L Y Y+  AA++F PE S  R++WAK  +L   +D +F+   S 
Sbjct: 481 WIVENRLQELKFARQKLAYCYFSGAATLFSPELSDARISWAKGGVLTTVVDDFFDVGGSK 540

Query: 60  NSVEERKDFVQQFKHGVGAPAGLVNGRKLETKTRQELVGIVLGTLNDVSLD----ALVAH 115
             +E     V+++    G P           +   E V I+   L D  L+    A    
Sbjct: 541 EELENLIHLVEKWDLN-GVP-----------EYSSEHVEIIFSVLRDTILETGDKAFTYQ 588

Query: 116 GTDISHSLRHAWEKWLTNWEKEGD 139
           G +++H +   W   L +  +E +
Sbjct: 589 GRNVTHHIVKIWLDLLKSMLREAE 612