Jatropha Genome Database

JcCB0224421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224421.10 - phase: 0 /partial
         (136 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04955.1 | Symbols: ATALN | ATALN (Arabidopsis allantoinase);...    98   1e-21

>AT4G04955.1 | Symbols: ATALN | ATALN (Arabidopsis allantoinase);
           allantoinase/ hydrolase | chr4:2522301-2525259 REVERSE
          Length = 506

 Score = 98.2 bits (243), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/68 (67%), Positives = 55/68 (80%), Gaps = 1/68 (1%)

Query: 35  CSLLPYKHYWITSKSIVTPQGIISGAVEVKEGNIVSIVKEEDWQGYSK-RGPILDYGEAV 93
           CSLLP+ HYWI+SK IVTP G+ISG+VEVK G IVS+VKE DW    + R  ++DYGEAV
Sbjct: 37  CSLLPHDHYWISSKRIVTPNGLISGSVEVKGGIIVSVVKEVDWHKSQRSRVKVIDYGEAV 96

Query: 94  VMPGLIDV 101
           +MPGLIDV
Sbjct: 97  LMPGLIDV 104