Jatropha Genome Database

JcCB0224001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224001.20 + phase: 0 /partial
         (118 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51420.1 | Symbols: SSL4, ATSSL4 | SSL4 (STRICTOSIDINE SYNTHA...   109   4e-25
AT3G51440.1 | Symbols:  | strictosidine synthase family protein ...   108   5e-25
AT3G51430.1 | Symbols: YLS2 | YLS2; strictosidine synthase | chr...   108   7e-25
AT3G51450.1 | Symbols:  | strictosidine synthase family protein ...   105   9e-24

>AT3G51420.1 | Symbols: SSL4, ATSSL4 | SSL4 (STRICTOSIDINE
           SYNTHASE-LIKE 4); strictosidine synthase |
           chr3:19084082-19085451 FORWARD
          Length = 370

 Score =  109 bits (272), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 68/114 (59%), Gaps = 1/114 (0%)

Query: 6   LTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXX 65
           +T P     + N R L G+EF+GVG L  PEDIAY  +S +IYT C DGW+KR       
Sbjct: 41  ITSPTSIPPLLNDRFLTGAEFIGVGLLNNPEDIAYHKDSNLIYTGCVDGWVKRVSVHDSA 100

Query: 66  XXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDG-EIELLTDEAEG 118
                     TGGRPLG+  G   +VIVADA KGLL IS  G + ELLTDEA+G
Sbjct: 101 NDSIVEDWVNTGGRPLGIAFGLHGEVIVADANKGLLSISDGGKKTELLTDEADG 154


>AT3G51440.1 | Symbols:  | strictosidine synthase family protein |
           chr3:19089114-19090537 FORWARD
          Length = 371

 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 70/110 (63%), Gaps = 4/110 (3%)

Query: 10  PPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXXXXXX 69
           PP   + N R L G+EF+GVG L +PEDIAY  +SG IYT C DGW+KR           
Sbjct: 48  PP---LINERFLTGAEFIGVGLLNSPEDIAYHEDSGFIYTGCVDGWVKRVKVAESVNDSL 104

Query: 70  XXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDG-EIELLTDEAEG 118
                 TGGRPLG+  G   +VIVADAYKGLL IS DG + ELLT+EA+G
Sbjct: 105 VEDLVNTGGRPLGIAFGIHGEVIVADAYKGLLNISGDGKKTELLTEEADG 154


>AT3G51430.1 | Symbols: YLS2 | YLS2; strictosidine synthase |
           chr3:19086548-19087909 FORWARD
          Length = 371

 Score =  108 bits (270), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 60/113 (53%), Positives = 69/113 (61%), Gaps = 4/113 (3%)

Query: 7   TDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXXX 66
           T  PP  S K    L G+EF+GVG L  PEDIAY  +S +IYT C DGW+KR        
Sbjct: 45  TSIPPLISDK---YLTGAEFIGVGLLDKPEDIAYHQDSNLIYTGCIDGWVKRVSVHDSAN 101

Query: 67  XXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDG-EIELLTDEAEG 118
                    TGGRPLG+  G   +VIVADAYKGLL IS DG + ELLTD+AEG
Sbjct: 102 DSVVEDWVNTGGRPLGIAFGVHGEVIVADAYKGLLNISGDGKKTELLTDQAEG 154


>AT3G51450.1 | Symbols:  | strictosidine synthase family protein |
           chr3:19091013-19092393 FORWARD
          Length = 371

 Score =  105 bits (261), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 68/113 (60%), Gaps = 4/113 (3%)

Query: 7   TDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXXX 66
           T  PP   + N   L G+EF+GVG L  PEDIAY  ES +IYT C DGW+KR        
Sbjct: 45  TSLPP---LINDEFLTGAEFIGVGLLNIPEDIAYHKESNLIYTGCVDGWVKRVKVADSVN 101

Query: 67  XXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDG-EIELLTDEAEG 118
                    TGGRPLG+  G   +VIVAD +KGLL IS DG + ELLTDEA+G
Sbjct: 102 DSVVEDWVNTGGRPLGIAFGIHGEVIVADVHKGLLNISGDGKKTELLTDEADG 154