Jatropha Genome Database

JcCB0224001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224001.10 + phase: 0 /TE/partial
         (469 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18560.1 | Symbols:  | DNA binding / protein dimerization | c...    59   5e-09
AT3G42170.1 | Symbols:  | DNA binding | chr3:14321838-14323928 F...    57   3e-08

>AT1G18560.1 | Symbols:  | DNA binding / protein dimerization |
           chr1:6385614-6388005 FORWARD
          Length = 690

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 67/156 (42%)

Query: 2   YMGITCHWIDDDWKIQKRIIAFRVFDDKHTANNIYRIIVSILDEYKLTKKFFSISFDNAS 61
           YM +T  WID++W   + ++           + IY  ++ +L  Y +  +    + DN+ 
Sbjct: 220 YMSVTGQWIDENWSSHRLLLDICRIPYPSGGSEIYNSLLKVLKTYAIEDRILCCTHDNSE 279

Query: 62  ANTKSIIELKNICEPNIGGKFFHIRCACHVLNLCVQDGLKILESFISPIKKAISYLWGHP 121
               +   LK   +      F +I CA   LN  + +GL  ++  IS +++    L    
Sbjct: 280 NAIHACHSLKEYFDGQKVLPFCYIPCAAQTLNDIIDEGLATIKPIISKVREFTQELNAST 339

Query: 122 QVMKSWAKFCKENNKRPKRFPRDVPTRWNSTYELLN 157
           ++   + +      +   + P D  +RW+  Y+++N
Sbjct: 340 ELSDDFIQLTTAYQEGNWKLPIDASSRWSGNYQMVN 375


>AT3G42170.1 | Symbols:  | DNA binding | chr3:14321838-14323928
           FORWARD
          Length = 696

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 1   SYMGITCHWIDDDWKIQKRIIAFRVFDDKHTANNIYRIIVSILDEYKLTKKFFSISFDNA 60
            Y+ IT H+ID DWKIQK+++   +         +   + + + E+ L  K F+++F++ 
Sbjct: 247 GYVFITAHYIDSDWKIQKKLLNVLMESYPEADEALSLAVANCVSEWGLEGKLFNVTFNHP 306

Query: 61  SANTKSIIELKNICEPNIG---GKFFHIRCACHVLNLCVQDGLKILESFISPIKKAISYL 117
           ++N+        +C  N G   G+     C         +D L+  +  I  I+ ++ ++
Sbjct: 307 ASNSAVENIRPQLCIKNPGILDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHV 366

Query: 118 WGHPQVMKSWAKFCKENNKRP--KRFPRDVPTRWNSTYELLNESFSYKELLCFFVTNNIE 175
                  + + +  KE  + P  K    D  T+WN+TY +L  +   KE+     T +  
Sbjct: 367 KTSESHEERFTEL-KEQLQVPSEKVLSLDDQTQWNTTYMMLVAASELKEVFSCLDTAD-P 424

Query: 176 DINLYP--QNWDICAKILDILKIFNDATYKFSGVYYPTSXLF 215
           D    P  ++W     +   LK   +A         P++  F
Sbjct: 425 DYKKPPSAEDWRHVEALCTFLKPLFEAVSTLQSTGNPSAVTF 466