Jatropha Genome Database

JcCB0220081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0220081.10 - phase: 0 /partial
         (296 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60600.2 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | HDS (4-HYDR...   506   e-144
AT5G60600.1 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | HDS (4-HYDR...   505   e-143
AT5G60600.3 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | HDS (4-HYDR...   383   e-107

>AT5G60600.2 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | HDS
           (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE); 4
           iron, 4 sulfur cluster binding /
           4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
           chr5:24359447-24363274 FORWARD
          Length = 740

 Score =  506 bits (1302), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/293 (84%), Positives = 262/293 (89%)

Query: 1   DLATVDSILLRELPPVEDSDARLALKRLIDISMGVITPLSEQLTKPLPNAMVLVNLKEIA 60
           DLATVDSILLRELPPV+D  ARLALKRLID+SMGVI PLSEQLTKPLPNAMVLVNLKE++
Sbjct: 444 DLATVDSILLRELPPVDDQVARLALKRLIDVSMGVIAPLSEQLTKPLPNAMVLVNLKELS 503

Query: 61  TGAYKLLPEGTRLVVSVRGDESYEELEILKDIDATMILHDLPFTEDKIGRVHAARRLFEF 120
            GAYKLLPEGTRLVVS+RGDE YEELEILK+IDATMILHD+PFTEDK+ RVHAARRLFEF
Sbjct: 504 GGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDATMILHDVPFTEDKVSRVHAARRLFEF 563

Query: 121 LSDHALNFPVIHHIQFPNAIHRDDLVIGAGTNXXXXXXXXXXXXXXXEAPGQDFDFLRNT 180
           LS++++NFPVIHHI FP  IHRD+LVI AGT                EAP QDFDFLRNT
Sbjct: 564 LSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGGLLVDGLGDGVMLEAPDQDFDFLRNT 623

Query: 181 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPG 240
           SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPG
Sbjct: 624 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPG 683

Query: 241 EMADADFGYVGGAPGKIDLYVGKTVVKRGIDMEGATDALIQLIKDHGRWVDPP 293
           EMADADFGYVGG+PGKIDLYVGKTVVKRGI M  ATDALI LIK+HGRWVDPP
Sbjct: 684 EMADADFGYVGGSPGKIDLYVGKTVVKRGIAMTEATDALIGLIKEHGRWVDPP 736


>AT5G60600.1 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | HDS
           (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE); 4
           iron, 4 sulfur cluster binding /
           4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
           chr5:24359447-24363274 FORWARD
          Length = 741

 Score =  505 bits (1301), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/293 (84%), Positives = 262/293 (89%)

Query: 1   DLATVDSILLRELPPVEDSDARLALKRLIDISMGVITPLSEQLTKPLPNAMVLVNLKEIA 60
           DLATVDSILLRELPPV+D  ARLALKRLID+SMGVI PLSEQLTKPLPNAMVLVNLKE++
Sbjct: 445 DLATVDSILLRELPPVDDQVARLALKRLIDVSMGVIAPLSEQLTKPLPNAMVLVNLKELS 504

Query: 61  TGAYKLLPEGTRLVVSVRGDESYEELEILKDIDATMILHDLPFTEDKIGRVHAARRLFEF 120
            GAYKLLPEGTRLVVS+RGDE YEELEILK+IDATMILHD+PFTEDK+ RVHAARRLFEF
Sbjct: 505 GGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDATMILHDVPFTEDKVSRVHAARRLFEF 564

Query: 121 LSDHALNFPVIHHIQFPNAIHRDDLVIGAGTNXXXXXXXXXXXXXXXEAPGQDFDFLRNT 180
           LS++++NFPVIHHI FP  IHRD+LVI AGT                EAP QDFDFLRNT
Sbjct: 565 LSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGGLLVDGLGDGVMLEAPDQDFDFLRNT 624

Query: 181 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPG 240
           SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPG
Sbjct: 625 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPG 684

Query: 241 EMADADFGYVGGAPGKIDLYVGKTVVKRGIDMEGATDALIQLIKDHGRWVDPP 293
           EMADADFGYVGG+PGKIDLYVGKTVVKRGI M  ATDALI LIK+HGRWVDPP
Sbjct: 685 EMADADFGYVGGSPGKIDLYVGKTVVKRGIAMTEATDALIGLIKEHGRWVDPP 737


>AT5G60600.3 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | HDS
           (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE); 4
           iron, 4 sulfur cluster binding /
           4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
           chr5:24359447-24363019 FORWARD
          Length = 717

 Score =  383 bits (983), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/229 (82%), Positives = 202/229 (88%)

Query: 1   DLATVDSILLRELPPVEDSDARLALKRLIDISMGVITPLSEQLTKPLPNAMVLVNLKEIA 60
           DLATVDSILLRELPPV+D  ARLALKRLID+SMGVI PLSEQLTKPLPNAMVLVNLKE++
Sbjct: 445 DLATVDSILLRELPPVDDQVARLALKRLIDVSMGVIAPLSEQLTKPLPNAMVLVNLKELS 504

Query: 61  TGAYKLLPEGTRLVVSVRGDESYEELEILKDIDATMILHDLPFTEDKIGRVHAARRLFEF 120
            GAYKLLPEGTRLVVS+RGDE YEELEILK+IDATMILHD+PFTEDK+ RVHAARRLFEF
Sbjct: 505 GGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDATMILHDVPFTEDKVSRVHAARRLFEF 564

Query: 121 LSDHALNFPVIHHIQFPNAIHRDDLVIGAGTNXXXXXXXXXXXXXXXEAPGQDFDFLRNT 180
           LS++++NFPVIHHI FP  IHRD+LVI AGT                EAP QDFDFLRNT
Sbjct: 565 LSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGGLLVDGLGDGVMLEAPDQDFDFLRNT 624

Query: 181 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSI 229
           SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVS+
Sbjct: 625 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSV 673