Jatropha Genome Database
- JcCB0217351.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0217351.10 + phase: 0 /partial
(158 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02380.1 | Symbols: COL2 | COL2 (constans-like 2); transcript... 150 5e-37
AT5G15850.1 | Symbols: COL1, ATCOL1 | COL1 (constans-like 1); tr... 147 2e-36
AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); transcription fac... 136 5e-33
AT2G24790.1 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3); pr... 80 6e-16
AT5G57660.1 | Symbols: ATCOL5, COL5 | zinc finger (B-box type) f... 74 3e-14
AT5G24930.1 | Symbols: ATCOL4, COL4 | zinc finger (B-box type) f... 72 1e-13
AT5G14370.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 52 1e-07
AT1G73870.1 | Symbols: | zinc finger (B-box type) family protei... 52 2e-07
AT2G33350.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 48 2e-06
AT2G33350.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 48 2e-06
>AT3G02380.1 | Symbols: COL2 | COL2 (constans-like 2); transcription
factor/ zinc ion binding | chr3:487438-488624 REVERSE
Length = 347
Score = 150 bits (378), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 107/158 (67%), Gaps = 8/158 (5%)
Query: 9 DQMINHHQQ-YRNFQLGLEFD-SSKPTYSYNG------SVSISSMDVGVVQDSTMSEISI 60
++ +H QQ +NFQLG+ + SS Y+ N S S+SSMD+ VV +ST S+I++
Sbjct: 190 EESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDLNHSASVSSMDISVVPESTASDITV 249
Query: 61 SHSRTPKGTIDLFSGPPMQMPSQLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAET 120
H RT K TID SGPP Q+ QL+P +REARVLRY IRYASRKAYAE
Sbjct: 250 QHPRTTKETIDQLSGPPTQVVQQLTPMEREARVLRYREKKKTRKFDKTIRYASRKAYAEI 309
Query: 121 RPRIKGRFAKRTDVDFEVDQMFSTTLMTETGYSIVPSF 158
RPRIKGRFAKR + + E +++FST+LM+ETGY IVPSF
Sbjct: 310 RPRIKGRFAKRIETEAEAEEIFSTSLMSETGYGIVPSF 347
>AT5G15850.1 | Symbols: COL1, ATCOL1 | COL1 (constans-like 1);
transcription factor/ zinc ion binding |
chr5:5176297-5177473 REVERSE
Length = 355
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 97/148 (65%), Gaps = 7/148 (4%)
Query: 15 HQQYRNFQLGLEFDSSKPTYSYNGS----VSISSMDVGVVQDSTMSEISISHSRTPKGTI 70
+Q+ +NFQL + S S NGS V++SSMD+GVV +ST S+ ++S+ R+PK
Sbjct: 211 YQEQQNFQLSINCGSWGALRSSNGSLSHMVNVSSMDLGVVPESTTSDATVSNPRSPKAVT 270
Query: 71 DLFSGPPMQMPSQLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAK 130
D PP QM LSPRDREARVLRY IRYASRKAYAE RPRIKGRFAK
Sbjct: 271 DQPPYPPAQM---LSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAK 327
Query: 131 RTDVDFEVDQMFSTTLMTETGYSIVPSF 158
+ DVD E +Q FST + +TGY IVPSF
Sbjct: 328 KKDVDEEANQAFSTMITFDTGYGIVPSF 355
>AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); transcription
factor/ transcription regulator/ zinc ion binding |
chr5:5171343-5172697 REVERSE
Length = 373
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/151 (52%), Positives = 98/151 (64%), Gaps = 10/151 (6%)
Query: 14 HHQQYRNFQLGLEFDSSKPTYSYNGSVS----ISSMDVGVVQDSTMSEISISHSRTPKGT 69
H+QQ NFQ +++ SS Y+ NGS++ ISSM+ GVV +ST + SH RTPKGT
Sbjct: 227 HNQQ--NFQFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPESTACVTTASHPRTPKGT 284
Query: 70 IDLFSGPPMQM--PSQLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGR 127
++ P QM +QLSP DREARVLRY IRYASRKAYAE RPR+ GR
Sbjct: 285 VEQQPDPASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGR 344
Query: 128 FAKRTDVDFEVDQMFSTTLMTETGYSIVPSF 158
FAKR +++ E +Q F+T LM TGY IVPSF
Sbjct: 345 FAKR-EIEAE-EQGFNTMLMYNTGYGIVPSF 373
>AT2G24790.1 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3);
protein binding / transcription factor/ zinc ion binding
| chr2:10566959-10567946 FORWARD
Length = 294
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 63/119 (52%), Gaps = 14/119 (11%)
Query: 15 HQQYRNFQLGLEFDSSKPTYSYNGSVSISSMDVGVVQDSTMSEISISHSRTPKGTIDLFS 74
++ Y NF L S + N +VS ++DV +V +S ++++ TP
Sbjct: 169 NEDYFNFDLSASKISQQGFNFINQTVSTRTIDVPLVPESGGVTAEMTNTETPA------- 221
Query: 75 GPPMQMPSQLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTD 133
QLSP +REARVLRY IRYASRKAYAE RPRIKGRFAKRTD
Sbjct: 222 -------VQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 273
>AT5G57660.1 | Symbols: ATCOL5, COL5 | zinc finger (B-box type)
family protein | chr5:23355573-23356729 FORWARD
Length = 355
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 83 QLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDVDFEVDQMF 142
Q S DREARVLRY IRYASRKAYAE+RPRIKGRFAKRT+ E D +F
Sbjct: 279 QASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTET--ENDDIF 336
Query: 143 STTLMTETG---YSIVPSF 158
+ + Y +VP+F
Sbjct: 337 LSHVYASAAHAQYGVVPTF 355
>AT5G24930.1 | Symbols: ATCOL4, COL4 | zinc finger (B-box type)
family protein | chr5:8589325-8590949 FORWARD
Length = 406
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 76 PPMQMPSQLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDVD 135
P Q L+ +REARV+RY IRYASRKAYAE RPRIKGRFAKRTD +
Sbjct: 326 PGTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTN 385
Query: 136 FEVDQMFSTTLMTETGYSIVPSF 158
D + + +G+ +VP+F
Sbjct: 386 ESNDVVGHGGIF--SGFGLVPTF 406
>AT5G14370.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: CCT domain
(InterPro:IPR010402); BEST Arabidopsis thaliana protein
match is: CIL (TAIR:AT4G25990.1); Has 1815 Blast hits to
1506 proteins in 139 species: Archae - 0; Bacteria - 8;
Metazoa - 291; Fungi - 53; Plants - 1145; Viruses - 0;
Other Eukaryotes - 318 (source: NCBI BLink). |
chr5:4632147-4633651 REVERSE
Length = 339
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 71 DLFSGPPMQMPSQLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAK 130
+L++ P M+ +L REA +LRY IRY RK AE RPR+KGRF K
Sbjct: 276 NLWAVPEMETTERLWRGHREASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVK 335
Query: 131 RTD 133
R D
Sbjct: 336 RED 338
>AT1G73870.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:27779214-27780522 FORWARD
Length = 392
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 27/45 (60%)
Query: 88 DREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRT 132
+REARVLRY IRY RK AE RPRIKGRF KRT
Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRT 388
>AT2G33350.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: zinc finger
CONSTANS-related (TAIR:AT1G04500.1); Has 7688 Blast hits
to 4734 proteins in 129 species: Archae - 8; Bacteria -
25; Metazoa - 148; Fungi - 118; Plants - 919; Viruses -
0; Other Eukaryotes - 6470 (source: NCBI BLink). |
chr2:14134116-14136836 FORWARD
Length = 409
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 83 QLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTD 133
+LSP R+ ++ RY I+YA RK A++RPR++GRFAK +
Sbjct: 304 KLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDE 354
>AT2G33350.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: zinc finger
CONSTANS-related (TAIR:AT1G04500.1); Has 7691 Blast hits
to 4729 proteins in 129 species: Archae - 8; Bacteria -
25; Metazoa - 148; Fungi - 114; Plants - 918; Viruses -
0; Other Eukaryotes - 6478 (source: NCBI BLink). |
chr2:14134116-14136836 FORWARD
Length = 410
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 83 QLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTD 133
+LSP R+ ++ RY I+YA RK A++RPR++GRFAK +
Sbjct: 305 KLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDE 355