Jatropha Genome Database

JcCB0216831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0216831.10 + phase: 0 /pseudo/partial
         (249 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74530.1 | Symbols:  | unknown protein | chr1:28009866-280120...   255   2e-68
AT1G74530.3 | Symbols:  | unknown protein | chr1:28009723-280120...   254   3e-68
AT1G74530.2 | Symbols:  | unknown protein | chr1:28009963-280120...   241   4e-64

>AT1G74530.1 | Symbols:  | unknown protein | chr1:28009866-28012044
           REVERSE
          Length = 289

 Score =  255 bits (651), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/225 (55%), Positives = 153/225 (68%), Gaps = 5/225 (2%)

Query: 11  NWWSHSKTVVLIWSVCIIVSFSLLQLALKXXXXXXXXXXXXXXXXXMEQRSRLYDKMARD 70
           NW    +T VL W++ + + +SL Q+ ++                  EQ +RLY+KM +D
Sbjct: 13  NW----RTAVLFWTISLTIFYSLFQMGIRNSPSTSSPSSDSFVSYA-EQSTRLYNKMEQD 67

Query: 71  LDEKGPTFLEHGETSQSLSLSDLFILKDGSLTPVLKAANPPVRANVLYMSPEYSVPISET 130
           L E GP FL+ GETSQSLSLSDLF LKDG + PVLK ANPPVRANVL++S EYSVP+ E 
Sbjct: 68  LQENGPVFLKQGETSQSLSLSDLFTLKDGKIAPVLKVANPPVRANVLHLSTEYSVPVLEV 127

Query: 131 VKHIFHPYFDQAIWFQNSSLYHFSMFHASHHILPVPXXXXXXXXXXXXXXXXXXGLCPLK 190
           VK++F PYF+  IWFQ+S +YHFSMFHAS+HI  VP                   LCPL+
Sbjct: 128 VKNVFSPYFENTIWFQDSKMYHFSMFHASNHIFSVPATEVEVEAEAAAVKAVAKELCPLE 187

Query: 191 IVLDRVVLTSTGVLLGCWQVISGPDPITIRSKLRTALPHAPEKQL 235
           I+LDRV+LTSTGVLLGCW+V SG DPITIR KLR+ LP APEKQL
Sbjct: 188 IILDRVLLTSTGVLLGCWKVNSGDDPITIRLKLRSVLPRAPEKQL 232


>AT1G74530.3 | Symbols:  | unknown protein | chr1:28009723-28012044
           REVERSE
          Length = 314

 Score =  254 bits (650), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/225 (55%), Positives = 153/225 (68%), Gaps = 5/225 (2%)

Query: 11  NWWSHSKTVVLIWSVCIIVSFSLLQLALKXXXXXXXXXXXXXXXXXMEQRSRLYDKMARD 70
           NW    +T VL W++ + + +SL Q+ ++                  EQ +RLY+KM +D
Sbjct: 13  NW----RTAVLFWTISLTIFYSLFQMGIRNSPSTSSPSSDSFVSYA-EQSTRLYNKMEQD 67

Query: 71  LDEKGPTFLEHGETSQSLSLSDLFILKDGSLTPVLKAANPPVRANVLYMSPEYSVPISET 130
           L E GP FL+ GETSQSLSLSDLF LKDG + PVLK ANPPVRANVL++S EYSVP+ E 
Sbjct: 68  LQENGPVFLKQGETSQSLSLSDLFTLKDGKIAPVLKVANPPVRANVLHLSTEYSVPVLEV 127

Query: 131 VKHIFHPYFDQAIWFQNSSLYHFSMFHASHHILPVPXXXXXXXXXXXXXXXXXXGLCPLK 190
           VK++F PYF+  IWFQ+S +YHFSMFHAS+HI  VP                   LCPL+
Sbjct: 128 VKNVFSPYFENTIWFQDSKMYHFSMFHASNHIFSVPATEVEVEAEAAAVKAVAKELCPLE 187

Query: 191 IVLDRVVLTSTGVLLGCWQVISGPDPITIRSKLRTALPHAPEKQL 235
           I+LDRV+LTSTGVLLGCW+V SG DPITIR KLR+ LP APEKQL
Sbjct: 188 IILDRVLLTSTGVLLGCWKVNSGDDPITIRLKLRSVLPRAPEKQL 232


>AT1G74530.2 | Symbols:  | unknown protein | chr1:28009963-28012044
           REVERSE
          Length = 262

 Score =  241 bits (614), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 123/229 (53%), Positives = 151/229 (65%), Gaps = 9/229 (3%)

Query: 11  NWWSHSKTVVLIWSVCIIVSFSLLQLALKXXXXXXXXXXXXXXXXXMEQRSRLYDKMARD 70
           NW    +T VL W++ + + +SL Q+ ++                  EQ +RLY+KM +D
Sbjct: 13  NW----RTAVLFWTISLTIFYSLFQMGIRNSPSTSSPSSDSFVSYA-EQSTRLYNKMEQD 67

Query: 71  LDEKGPTFLEHGETSQSLSLSDLFILKDGSLTPVLKAANPPVRANVLYMSPEYSVPISET 130
           L E GP FL+ GETSQSLSLSDLF LKDG + PVLK ANPPVRANVL++S EYSVP+ E 
Sbjct: 68  LQENGPVFLKQGETSQSLSLSDLFTLKDGKIAPVLKVANPPVRANVLHLSTEYSVPVLEV 127

Query: 131 VKHIFHPYFDQ----AIWFQNSSLYHFSMFHASHHILPVPXXXXXXXXXXXXXXXXXXGL 186
           VK++F PYF+     AI   +S +YHFSMFHAS+HI  VP                   L
Sbjct: 128 VKNVFSPYFENSKPAAITIYDSKMYHFSMFHASNHIFSVPATEVEVEAEAAAVKAVAKEL 187

Query: 187 CPLKIVLDRVVLTSTGVLLGCWQVISGPDPITIRSKLRTALPHAPEKQL 235
           CPL+I+LDRV+LTSTGVLLGCW+V SG DPITIR KLR+ LP APEKQL
Sbjct: 188 CPLEIILDRVLLTSTGVLLGCWKVNSGDDPITIRLKLRSVLPRAPEKQL 236