Jatropha Genome Database

JcCB0216511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0216511.10 - phase: 0 
         (67 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22740.1 | Symbols: HMT3 | HMT3; homocysteine S-methyltransfe...   107   2e-24
AT3G63250.1 | Symbols: HMT-2, ATHMT-2, HMT2 | HMT2 (HOMOCYSTEINE...    92   7e-20
AT3G25900.2 | Symbols: HMT-1, ATHMT-1 | HMT-1; homocysteine S-me...    77   2e-15
AT3G25900.1 | Symbols: HMT-1, ATHMT-1 | HMT-1; homocysteine S-me...    77   3e-15

>AT3G22740.1 | Symbols: HMT3 | HMT3; homocysteine
          S-methyltransferase | chr3:8033200-8035710 REVERSE
          Length = 347

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 55/61 (90%)

Query: 7  DTSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKVLYSFLI 66
          +TSS M+DFL+KCGGYAV+DGGFATEL+RHGAD+NDPLWSAKCLI+SPHLV KV   +L 
Sbjct: 8  ETSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLE 67

Query: 67 S 67
          S
Sbjct: 68 S 68


>AT3G63250.1 | Symbols: HMT-2, ATHMT-2, HMT2 | HMT2 (HOMOCYSTEINE
          METHYLTRANSFERASE 2); homocysteine S-methyltransferase
          | chr3:23370575-23372587 REVERSE
          Length = 333

 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 45/54 (83%)

Query: 12 MSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKVLYSFL 65
          M DFL++ GGYAVIDGG ATE ERHGADLNDPLWSAKCL++SPHL+  V   +L
Sbjct: 9  MKDFLKQTGGYAVIDGGLATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYL 62


>AT3G25900.2 | Symbols: HMT-1, ATHMT-1 | HMT-1; homocysteine
          S-methyltransferase | chr3:9480964-9482416 FORWARD
          Length = 268

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 9  SSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKVLYSFL 65
          S+ + D ++KCGG AV+DGGFAT+LE HGA +NDPLWSA  LI +P L+++V   +L
Sbjct: 7  SALLEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYL 63


>AT3G25900.1 | Symbols: HMT-1, ATHMT-1 | HMT-1; homocysteine
          S-methyltransferase | chr3:9480964-9482684 FORWARD
          Length = 326

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 9  SSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKVLYSFL 65
          S+ + D ++KCGG AV+DGGFAT+LE HGA +NDPLWSA  LI +P L+++V   +L
Sbjct: 7  SALLEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYL 63