Jatropha Genome Database

JcCB0215961.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0215961.20 + phase: 2 /partial
         (314 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G44900.1 | Symbols: MCM2 | ATP binding / DNA binding / DNA-de...   440   e-124
AT5G46280.1 | Symbols: MCM3 | DNA replication licensing factor, ...   153   2e-37
AT2G07690.1 | Symbols: MCM5 | minichromosome maintenance family ...   139   2e-33
AT2G16440.1 | Symbols: MCM4 | DNA replication licensing factor, ...   131   7e-31
AT5G44635.1 | Symbols: MCM6 | minichromosome maintenance family ...   127   1e-29
AT2G14050.1 | Symbols: MCM9 | MCM9; ATP binding / DNA binding / ...   114   1e-25
AT4G02060.1 | Symbols: PRL, MCM7 | PRL (PROLIFERA); ATP binding ...   112   2e-25
AT3G09660.1 | Symbols: MCM8 | MCM8; ATP binding / DNA binding / ...   109   2e-24

>AT1G44900.1 | Symbols: MCM2 | ATP binding / DNA binding /
           DNA-dependent ATPase | chr1:16970291-16974457 FORWARD
          Length = 936

 Score =  440 bits (1132), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/308 (72%), Positives = 268/308 (87%), Gaps = 3/308 (0%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
           VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANP+GGRYDSSK+F QNVELTDPI+SRF
Sbjct: 624 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKSFAQNVELTDPILSRF 683

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
           DILCVVKDVVDPV DEMLA+FVV+SHFKSQPKG  ++D   S+ ++  Q S+   DPE+L
Sbjct: 684 DILCVVKDVVDPVTDEMLAEFVVNSHFKSQPKGGKMED---SDPEDGIQGSSGSTDPEVL 740

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRMSE 180
           PQ+LLKKY+TY+KL VFP+L + D +KL+ VYA LRRES +GQGV IA RH+ESMIRMSE
Sbjct: 741 PQNLLKKYLTYSKLYVFPKLGELDAKKLETVYANLRRESMNGQGVSIATRHLESMIRMSE 800

Query: 181 SHARMHLRQHVTEEDVDVAIRVLLNSFISTQKYGVQRALQKSFRKYITYKMDYNRMLLNL 240
           +HARMHLRQ+VTEEDV++AIRVLL+SFISTQK+GVQR L++SF++YITYK D+N +LL L
Sbjct: 801 AHARMHLRQYVTEEDVNMAIRVLLDSFISTQKFGVQRTLRESFKRYITYKKDFNSLLLVL 860

Query: 241 LQELVNRALRFEEIITGSISGLSHIDVKVEDLRIMAEERGISDLNPFFSSTDFSAANFEL 300
           L+ELV  AL+FEEII+GS SGL  I+VK+E+L+  A+E  I+DL PFFSSTDFS A+FEL
Sbjct: 861 LKELVKNALKFEEIISGSNSGLPTIEVKIEELQTKAKEYDIADLRPFFSSTDFSKAHFEL 920

Query: 301 DNVRQVIK 308
           D+ R +IK
Sbjct: 921 DHGRGMIK 928


>AT5G46280.1 | Symbols: MCM3 | DNA replication licensing factor,
           putative | chr5:18769902-18773606 REVERSE
          Length = 776

 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 130/222 (58%), Gaps = 20/222 (9%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
           V+IHE MEQQ+++I+KAGI  SL ARCSV+AAANPI G YD S T T+N+ L D ++SRF
Sbjct: 410 VAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRF 469

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQAS--------- 111
           D+L +V D +D   D M+++ V+  H     +G    D SL  ++ED   S         
Sbjct: 470 DLLFIVLDQMDAGIDSMISEHVLRMHRYKNDRGEAGPDGSLPYAREDNAESEMFVKYNQT 529

Query: 112 -------ARPFDPEILPQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSH--- 161
                   +  D + L    LKKYI YAK  + P+L D   E++ + YA+LR   S    
Sbjct: 530 LHGKKKRGQTHD-KTLTIKFLKKYIHYAKHRITPKLTDEASERIAEAYADLRNAGSDTKT 588

Query: 162 GQGVPIAVRHIESMIRMSESHARMHLRQHVTEEDVDVAIRVL 203
           G  +PI  R +E++IR++ +HA+M L   VT+ D + A++++
Sbjct: 589 GGTLPITARTLETIIRLATAHAKMKLSSEVTKADAEAALKLM 630


>AT2G07690.1 | Symbols: MCM5 | minichromosome maintenance family
           protein / MCM family protein | chr2:3523379-3527388
           REVERSE
          Length = 727

 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 27/226 (11%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
           V+IHEAMEQQ+ISI+KAGI T L +R SV+AAANP  GRYD  KT   N++L   I+SRF
Sbjct: 450 VAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRF 509

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
           D++ +VKD+     D+ +A  ++  H       AN      ++S+ED             
Sbjct: 510 DLIFIVKDIRKYSQDKEIASHIIRVH-----ASANKFSDENTDSKED------------- 551

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELR-------RESSHGQGVPIAVRHIE 173
             + LK+YI Y +    PRL     E L++ Y  +R        E+     +PI VR +E
Sbjct: 552 --NWLKRYIQYCRARCHPRLSKDAAENLQRKYVTIRMDMKRRAHETGEAAPIPITVRQLE 609

Query: 174 SMIRMSESHARMHLRQHVTEEDVDVAIRVLLNSFISTQKYGVQRAL 219
           +++R+SES A+M L    T +DVD A ++   S +   + G+ + +
Sbjct: 610 AIVRLSESLAKMRLSHEATPDDVDKAFKLFDTSTMDAARSGINQQI 655


>AT2G16440.1 | Symbols: MCM4 | DNA replication licensing factor,
           putative | chr2:7126536-7130665 REVERSE
          Length = 847

 Score =  131 bits (329), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 142/286 (49%), Gaps = 47/286 (16%)

Query: 3   IHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDI 62
           +HE MEQQ++SI+KAGI+ SL AR SV+A ANP G RY+   +  +N+ L   ++SRFD+
Sbjct: 562 LHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDL 621

Query: 63  LCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEILPQ 122
           + ++ D  D   D  LAK +V  HF               E+ E AQ        E +  
Sbjct: 622 IYLILDKPDEQTDRRLAKHIVALHF---------------ENAESAQE-------EAIDI 659

Query: 123 DLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRR----ESSHGQGVPIAVRHIESMIRM 178
             L  Y++YA+ N+ P+L D   E+L + Y ELR+      S  + +    R IES+IR+
Sbjct: 660 TTLTTYVSYARKNIHPKLSDEAAEELTRGYVELRKAGKFAGSSKKVITATPRQIESLIRL 719

Query: 179 SESHARMHLRQHVTEEDVDVAIRVLLNSFISTQKYGVQRALQKSFRKYITYKMDYNRMLL 238
           SE+ ARM   + V + DVD A R+L            + A+Q+S   + T  +D      
Sbjct: 720 SEALARMRFSEWVEKHDVDEAFRLL------------RVAMQQSATDHATGTID------ 761

Query: 239 NLLQELVNRALRFEEIITGSISGLSHIDVKVEDLRIMAEERGISDL 284
               +L+N  +   E +       S  D+ +E ++I      +S+L
Sbjct: 762 ---MDLINTGVSASERMRRDTFASSIRDIALEKMQIGGSSMRLSEL 804


>AT5G44635.1 | Symbols: MCM6 | minichromosome maintenance family
           protein / MCM family protein | chr5:18006431-18010542
           REVERSE
          Length = 831

 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/214 (40%), Positives = 118/214 (55%), Gaps = 27/214 (12%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
           V+IHEAMEQQ+ISI+KAGI  +L AR S++AAANP+GGRYD SK    NV L   I+SRF
Sbjct: 470 VAIHEAMEQQTISITKAGIQATLNARTSILAAANPVGGRYDKSKPLKYNVNLPPAILSRF 529

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
           D++ V+ D  D V D  +A  +V  H K +                          PE  
Sbjct: 530 DLVYVMIDDPDEVTDYHIAHHIVRVHQKHEAA----------------------LSPEFT 567

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRR-ESSHGQGVP--IAVRHIESMIR 177
               LK+YI YAK  + P+L     + L + Y  LRR +++ G  V   + VR +E++IR
Sbjct: 568 TVQ-LKRYIAYAK-TLKPKLSPEARKLLVESYVALRRGDTTPGTRVAYRMTVRQLEALIR 625

Query: 178 MSESHARMHLRQHVTEEDVDVAIRVLLNSFISTQ 211
           +SE+ AR HL   V    V +A+R+L  S IS +
Sbjct: 626 LSEAIARSHLEILVKPSHVLLAVRLLKTSVISVE 659


>AT2G14050.1 | Symbols: MCM9 | MCM9; ATP binding / DNA binding /
           DNA-dependent ATPase/ nucleoside-triphosphatase/
           nucleotide binding | chr2:5909240-5913817 FORWARD
          Length = 646

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 118/226 (52%), Gaps = 28/226 (12%)

Query: 2   SIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFD 61
           +IHEAMEQQSIS++KAG+VT+L  +  V  A NP  G+YD  ++ + N  L+ P++SRFD
Sbjct: 432 TIHEAMEQQSISVAKAGLVTTLSTKTIVFGATNP-KGQYDPDQSLSVNTALSGPLLSRFD 490

Query: 62  ILCVVKDVVDPVADEMLAKFVVDSHFKSQ---PKGANIDDRSLSESQEDAQASARPFDPE 118
           I+ V+ D  +P  D      VV SH  ++    +   +DD +                  
Sbjct: 491 IVLVLLDTKNPEWDA-----VVSSHILAEVQIEQDREVDDLT-----------------T 528

Query: 119 ILPQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRM 178
           I P  +L++YI + K N  P L   + E++   Y  L+R SS        VR +ES+IR+
Sbjct: 529 IWPLPMLQRYIQFVKKNFRPVL-SKEAEEIISSYYRLQRRSSTHNAARTTVRMLESLIRL 587

Query: 179 SESHARMHLRQHVTEEDVDVAIRVLLNSF-ISTQKYGVQRALQKSF 223
           +++HAR+  R  VT  D   AI  + +S  IS     +  AL  +F
Sbjct: 588 AQAHARLMFRNEVTRLDAITAILCIESSMTISAIVDSMGNALHSNF 633


>AT4G02060.1 | Symbols: PRL, MCM7 | PRL (PROLIFERA); ATP binding /
           DNA binding / DNA-dependent ATPase/
           nucleoside-triphosphatase/ nucleotide binding |
           chr4:901484-905297 FORWARD
          Length = 716

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 115/212 (54%), Gaps = 26/212 (12%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
            +IHE MEQQ++SI+KAGI TSL AR +V+AAANP  GRYD  +T  +N+ L   ++SRF
Sbjct: 451 TAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRF 510

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
           D+L ++ D  D  +D  LAK V+  H                +++E       P +P I 
Sbjct: 511 DLLWLILDRADMDSDLELAKHVLHVH----------------QTEESPALGFEPLEPNI- 553

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVP---IAVRHIESMIR 177
               L+ YI+ A+  + P +     E +   Y+ +R+E +     P     VR + S++R
Sbjct: 554 ----LRAYISAAR-RLSPYVPAELEEYIATAYSSIRQEEAKSN-TPHSYTTVRTLLSILR 607

Query: 178 MSESHARMHLRQHVTEEDVDVAIRVLLNSFIS 209
           +S + AR+   + V + DVD A+R++  S IS
Sbjct: 608 ISAALARLRFSESVAQSDVDEALRLMQMSKIS 639


>AT3G09660.1 | Symbols: MCM8 | MCM8; ATP binding / DNA binding /
           DNA-dependent ATPase/ nucleoside-triphosphatase/
           nucleotide binding | chr3:2961314-2966166 REVERSE
          Length = 777

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 121/220 (55%), Gaps = 34/220 (15%)

Query: 2   SIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFD 61
           ++ EAMEQQ +S++KAG+V SL AR SVIAAANP+GG Y+ +KT  +N++++  ++SRFD
Sbjct: 478 ALLEAMEQQCVSVAKAGLVASLSARTSVIAAANPVGGHYNRAKTVNENLKMSAALLSRFD 537

Query: 62  ILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEILP 121
           ++ ++ D  D + D+ +++ ++  H            R L   Q   Q     F      
Sbjct: 538 LVFILLDKPDELLDKQVSEHIMSHH------------RMLG-MQTCMQKGILYF------ 578

Query: 122 QDL---LKKYITYAKL------NVFPRLHDSDMEK-----LKQVYAELRRESSHGQGVPI 167
           QD    L+K  T+ +       N+FP +H   M K     +++ Y +LR  ++     PI
Sbjct: 579 QDCGWTLRKMTTFLRFLANCLGNIFP-MHGILMSKDAGEIIQKFYLKLRDHNTSADSTPI 637

Query: 168 AVRHIESMIRMSESHARMHLRQHVTEEDVDVAIRVLLNSF 207
             R +ES++R++++ AR+ LR+ +T +D    + ++  S 
Sbjct: 638 TARQLESLVRLAQARARVDLREEITVQDAMDVVEIMKESL 677