Jatropha Genome Database
- JcCB0213661.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0213661.20 - phase: 2 /pseudo/partial
(396 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13010.1 | Symbols: EMB3011 | EMB3011 (embryo defective 3011)... 239 3e-63
AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |... 126 2e-29
AT1G32490.1 | Symbols: EMB2733, ESP3 | ESP3 (ENHANCED SILENCING ... 120 2e-27
AT2G35340.1 | Symbols: MEE29 | MEE29 (maternal effect embryo arr... 119 3e-27
AT4G16680.1 | Symbols: | RNA helicase, putative | chr4:9388071-... 113 2e-25
AT2G47250.1 | Symbols: | RNA helicase, putative | chr2:19399923... 99 3e-21
AT3G62310.1 | Symbols: | RNA helicase, putative | chr3:23057516... 99 5e-21
AT1G27900.1 | Symbols: | RNA helicase, putative | chr1:9715615-... 79 4e-15
AT4G18465.1 | Symbols: | RNA helicase, putative | chr4:10197056... 77 2e-14
AT1G26370.1 | Symbols: | RNA helicase, putative | chr1:9122030-... 70 3e-12
AT1G33390.1 | Symbols: | helicase domain-containing protein | c... 67 2e-11
AT4G01020.1 | Symbols: | helicase domain-containing protein / I... 63 3e-10
AT5G10370.1 | Symbols: | helicase domain-containing protein / I... 62 5e-10
>AT5G13010.1 | Symbols: EMB3011 | EMB3011 (embryo defective 3011); ATP
binding / RNA helicase/ helicase/ nucleic acid binding |
chr5:4122747-4128660 FORWARD
Length = 1226
Score = 239 bits (609), Expect = 3e-63, Method: Composition-based stats.
Identities = 121/214 (56%), Positives = 132/214 (61%), Gaps = 2/214 (0%)
Query: 116 KMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEI 175
KMKV+N RMGMDALQVFP+SR A+DQ AGRA RT TCY LYTESAYLNEM+PSPVPEI
Sbjct: 829 KMKVFNPRMGMDALQVFPISRAASDQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEI 888
Query: 176 QRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWKM 235
QRTNLGNVV FDFMDPPPQ+NILNSMYQLWVL ALNNVG LTDLGWKM
Sbjct: 889 QRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGGLTDLGWKM 948
Query: 236 VEFHQTLHLLRCCXWESNWDAXMRFXRLXXXXXXXXXXXAPK--IEQRKVMLRGRXXXXX 293
VEF L + D + PK E+
Sbjct: 949 VEFPLDPPLAKMLLMGERLDCIDEVLTIVSMLSVPSVFFRPKERAEESDAAREKFFVPES 1008
Query: 294 XXXXXXXVYLQWKEHQYRGDWCNDHFLHIKGLRR 327
VY QWKEH YRGDWCNDH+L +KGLR+
Sbjct: 1009 DHLTLLNVYQQWKEHDYRGDWCNDHYLQVKGLRK 1042
>AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |
chr3:9750122-9753719 REVERSE
Length = 1168
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 102/215 (47%), Gaps = 2/215 (0%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
K VYN + G+++L + P+S+ +A Q AGRA RT CY LYTESAY NEM P+ +PE
Sbjct: 810 AKQNVYNPKQGLESLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPE 869
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
IQR NLG FDFMDPP ++++M QL+ L AL+ G LT LG K
Sbjct: 870 IQRINLGMTTLTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRK 929
Query: 235 MVEFHQTLHLLRCCXWESNWDAXMRFXRLXXXXXXXXXXXAPKIEQRKV-MLRGRXXXXX 293
M EF L + + + P+ +Q + R +
Sbjct: 930 MAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGNIFYRPREKQAQADQKRAKFFQPE 989
Query: 294 XX-XXXXXVYLQWKEHQYRGDWCNDHFLHIKGLRR 327
VY WK + G WC ++F+ + LRR
Sbjct: 990 GDHLTLLAVYEAWKAKNFSGPWCFENFIQSRSLRR 1024
>AT1G32490.1 | Symbols: EMB2733, ESP3 | ESP3 (ENHANCED SILENCING
PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/
ATP-dependent helicase/ helicase/ nucleic acid binding |
chr1:11742356-11749286 REVERSE
Length = 1044
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 75/124 (60%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
KMK YN R GM++L + P+S+ +A Q AGRA RT CY LYT Y N++ + VPE
Sbjct: 699 SKMKSYNPRTGMESLLITPISKASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTVPE 758
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
+QRTNL +VV FDFMDPPP + ++ S+ L+ L ALN +G LT G +
Sbjct: 759 VQRTNLASVVLALKSLGIHDLINFDFMDPPPAEALVKSLELLFALGALNKLGELTKAGRR 818
Query: 235 MVEF 238
M EF
Sbjct: 819 MAEF 822
>AT2G35340.1 | Symbols: MEE29 | MEE29 (maternal effect embryo arrest
29); ATP binding / ATP-dependent RNA helicase/
ATP-dependent helicase/ helicase/ nucleic acid binding |
chr2:14872728-14879615 FORWARD
Length = 1044
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 74/124 (59%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
KMK YN R GM++L V P+S+ +A Q GRA RT CY LYT Y N++ + VPE
Sbjct: 699 SKMKSYNPRTGMESLLVTPISKASATQRTGRAGRTSPGKCYRLYTAFNYYNDLEDNTVPE 758
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
IQRTNL +VV FDFMDPPP + ++ S+ L+ L ALN +G LT G +
Sbjct: 759 IQRTNLASVVLSLKSLGIHNLLNFDFMDPPPSEALIKSLELLFALGALNQLGELTKAGRR 818
Query: 235 MVEF 238
M EF
Sbjct: 819 MAEF 822
>AT4G16680.1 | Symbols: | RNA helicase, putative |
chr4:9388071-9390774 REVERSE
Length = 883
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
CK+ YN R GM++L V P+S+ +A Q AGR+ RT C+ LY + ++ P+ +PE
Sbjct: 517 CKINSYNPRTGMESLLVTPISKASAAQRAGRSGRTGPGKCFRLYN----IKDLEPTTIPE 572
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
IQR NL +VV FDFMDPPP++ +L ++ L+ L AL+ +G +T +G +
Sbjct: 573 IQRANLASVVLTLKSLGIQDVFNFDFMDPPPENALLKALELLYALGALDEIGEITKVGER 632
Query: 235 MVEF 238
MVEF
Sbjct: 633 MVEF 636
>AT2G47250.1 | Symbols: | RNA helicase, putative |
chr2:19399923-19402981 REVERSE
Length = 729
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
K KVYN R+ +++L V P+S+ +A Q +GRA RT C+ LYTE ++ N++ P PE
Sbjct: 373 AKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPE 432
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
I R+NL N V FDFMDPP + ++ ++ L L AL++ G LT G
Sbjct: 433 ILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKTGEI 492
Query: 235 MVEF 238
M EF
Sbjct: 493 MSEF 496
>AT3G62310.1 | Symbols: | RNA helicase, putative |
chr3:23057516-23060561 REVERSE
Length = 726
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
K KVYN R+ +++L V P+S+ +A Q +GRA RT C+ LYTE ++ N++ P PE
Sbjct: 369 AKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPE 428
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
I R+NL N V FDFMDPP + ++ ++ L L AL++ G LT G
Sbjct: 429 ILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKTGEI 488
Query: 235 MVEF 238
M EF
Sbjct: 489 MSEF 492
>AT1G27900.1 | Symbols: | RNA helicase, putative |
chr1:9715615-9720346 REVERSE
Length = 700
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
K + YN GM +L V +S+ A+Q AGRA RT CY LY + Y ++ + + +PE
Sbjct: 301 VKQRQYNPSSGMFSLDVIQISKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPE 360
Query: 175 IQRTNLGNVV--XXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLG 232
IQRT+L V FDF+D P +++ +++ QL+ + A++ G +T +G
Sbjct: 361 IQRTSLAGSVLYLKSLDLPDIDILKFDFLDAPSSESLEDALKQLYFIDAIDENGAITRIG 420
Query: 233 WKMVEF 238
M +
Sbjct: 421 RTMSDL 426
>AT4G18465.1 | Symbols: | RNA helicase, putative |
chr4:10197056-10201611 FORWARD
Length = 704
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
K K YN +++L V P+S+ +A Q +GRA R CY LYTE +LN+M +PE
Sbjct: 371 SKQKFYNPISDIESLVVAPISKASARQRSGRAGRVRPGKCYRLYTEDYFLNQMPGEGIPE 430
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTD-LGW 233
+QR+NL + V FD+ PP + ++ ++ L+ L L++ +LT G+
Sbjct: 431 MQRSNLVSTVIQLKALGIDNILGFDWPAPPSSEAMIRALEVLYSLQILDDDAKLTSPTGF 490
Query: 234 KMVEF 238
++ E
Sbjct: 491 QVAEL 495
>AT1G26370.1 | Symbols: | RNA helicase, putative |
chr1:9122030-9125368 REVERSE
Length = 717
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
K + Y+ GM++L V P S+ Q +GRA R + LY E + ++ S PE
Sbjct: 378 VKARSYDPSKGMESLDVVPASKAQTLQRSGRAGREGPGKSFRLYPEREF-EKLEDSTKPE 436
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTD-LGW 233
I+R NL N++ FDF+D P + I+ ++ +L L AL + G+L + +G+
Sbjct: 437 IKRCNLSNIILQLKALGIDDIVGFDFIDKPSRGAIIKALAELHSLGALADDGKLENPVGY 496
Query: 234 KM 235
+M
Sbjct: 497 QM 498
>AT1G33390.1 | Symbols: | helicase domain-containing protein |
chr1:12099738-12104108 REVERSE
Length = 1237
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 60/123 (48%)
Query: 116 KMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEI 175
K+K Y+ + GM++ +V +S+ +A Q AGRA RT CY LY+ + + N S +PEI
Sbjct: 701 KVKNYDSKTGMESYEVDWISQASASQRAGRAGRTGPGHCYRLYSSAVFSNIFEESSLPEI 760
Query: 176 QRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWKM 235
+ + V+ F F PP I + L L AL++ G LT LG M
Sbjct: 761 MKVPVDGVILLMKSMNIPKVENFPFPTPPEPSAIREAERCLKALEALDSNGGLTPLGKAM 820
Query: 236 VEF 238
+
Sbjct: 821 SHY 823
>AT4G01020.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
| chr4:439086-445043 FORWARD
Length = 1787
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 116 KMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEI 175
K Y R GM L+V VS+++A Q AGRA RT+ CY LY+++ + + M + PEI
Sbjct: 599 KESKYEPRTGMSILKVCQVSQSSARQRAGRAGRTEPGRCYRLYSKTDF-DSMNLNQEPEI 657
Query: 176 QRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNI---LNSMYQLWVLSALNNVGRLTDLG 232
+R +LG + F+F+D P + I + ++ QL + N V LT G
Sbjct: 658 RRVHLGVALLRMLALGIDNIAAFEFVDAPVPEAIAMAIQNLVQLGAVVEKNGVLELTQEG 717
Query: 233 WKMVEF 238
+V+
Sbjct: 718 HCLVKL 723
>AT5G10370.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
| chr5:3261245-3267188 FORWARD
Length = 1775
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 116 KMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEI 175
K Y R GM L+V VS+++A Q AGRA RT+ CY LY+++ + + M + PEI
Sbjct: 602 KESKYEPRTGMSILKVCRVSQSSARQRAGRAGRTEPGRCYRLYSKNDF-DSMNLNQEPEI 660
Query: 176 QRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNI---LNSMYQLWVLSALNNVGRLTDLG 232
+R +LG + F+F+D P + I + ++ QL + N V LT G
Sbjct: 661 RRVHLGVALLRMLALGVNNIAEFNFVDAPVPEAIAMAVQNLVQLGAVVEKNGVHELTQEG 720
Query: 233 WKMVEF 238
+V+
Sbjct: 721 HCLVKL 726