Jatropha Genome Database

JcCB0213661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0213661.10 + phase: 0 /partial
         (125 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29000.1 | Symbols:  | heavy-metal-associated domain-containi...    65   1e-11

>AT1G29000.1 | Symbols:  | heavy-metal-associated domain-containing
           protein | chr1:10113018-10114340 FORWARD
          Length = 287

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 37/47 (78%)

Query: 2   DLHEWLLKHKGIFNVKTDIKTQNLTVEGTIESDKLLAYIRKKVHRNA 48
           DL   LLKHK I  VKTD K Q LTV+GTIES KLLAYI+KKVH++A
Sbjct: 129 DLQHKLLKHKAIHIVKTDTKAQTLTVQGTIESAKLLAYIKKKVHKHA 175



 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 34/43 (79%), Gaps = 1/43 (2%)

Query: 84  IEFKAEKKVEAIT-KEGNAPYFVHYVYAPQLFSDENPNACIIM 125
           +E+K   KVE    K+GN PYFVHYVYAPQLFSDENPNAC I+
Sbjct: 245 VEYKEIVKVEGQKDKDGNIPYFVHYVYAPQLFSDENPNACRIV 287