Jatropha Genome Database

JcCB0212191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0212191.10 + phase: 0 /partial
         (109 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18590.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   111   8e-26
AT3G52630.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   111   8e-26
AT3G52630.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   111   8e-26

>AT4G18590.1 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: cellular_component unknown; EXPRESSED IN:
          23 plant structures; EXPRESSED DURING: 13 growth
          stages; CONTAINS InterPro DOMAIN/s: Replication factor
          A protein 3 (InterPro:IPR013970), Nucleic acid-binding,
          OB-fold-like (InterPro:IPR016027); BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT3G52630.2); Has 58 Blast hits to 58 proteins in
          25 species: Archae - 0; Bacteria - 0; Metazoa - 26;
          Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes -
          4 (source: NCBI BLink). | chr4:10236524-10236940
          FORWARD
          Length = 106

 Score =  111 bits (278), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 71/88 (80%), Gaps = 1/88 (1%)

Query: 1  MDTSKPAIFVNGGLLPMHLRKRVRTVVQVLGSDRGSVIGKTTDDHQLVVKGTPPSAALTN 60
          MDTS PA FVNG LL  ++ ++VR V+QV+ SD GSVIGK+TDD Q+VVKG+ P   LT 
Sbjct: 1  MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGS-PQPPLTT 59

Query: 61 FVEVIGIAESDKSIQAEIWTSFGDTFGI 88
          ++EVIGIAE+D +I+AE+WT+FGD+F +
Sbjct: 60 YLEVIGIAETDNTIRAEVWTNFGDSFDV 87


>AT3G52630.2 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: cellular_component unknown; CONTAINS
          InterPro DOMAIN/s: Replication factor A protein 3
          (InterPro:IPR013970), Nucleic acid-binding,
          OB-fold-like (InterPro:IPR016027); BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G18590.1); Has 58 Blast hits to 58 proteins in
          25 species: Archae - 0; Bacteria - 0; Metazoa - 28;
          Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes -
          4 (source: NCBI BLink). | chr3:19514184-19514596
          FORWARD
          Length = 107

 Score =  111 bits (278), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 70/86 (81%)

Query: 1  MDTSKPAIFVNGGLLPMHLRKRVRTVVQVLGSDRGSVIGKTTDDHQLVVKGTPPSAALTN 60
          MDTS P+ FVNG LL   + ++VRTV+QV GS+ GSV+GK+TDD Q+VV+G+ P + LT 
Sbjct: 1  MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61 FVEVIGIAESDKSIQAEIWTSFGDTF 86
          ++EVIGIAESD +I+AE WT+FG+TF
Sbjct: 61 YLEVIGIAESDNAIRAETWTNFGNTF 86


>AT3G52630.1 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: cellular_component unknown; CONTAINS
          InterPro DOMAIN/s: Replication factor A protein 3
          (InterPro:IPR013970), Nucleic acid-binding,
          OB-fold-like (InterPro:IPR016027); BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G18590.1); Has 58 Blast hits to 58 proteins in
          25 species: Archae - 0; Bacteria - 0; Metazoa - 28;
          Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes -
          4 (source: NCBI BLink). | chr3:19514184-19514596
          FORWARD
          Length = 107

 Score =  111 bits (278), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 70/86 (81%)

Query: 1  MDTSKPAIFVNGGLLPMHLRKRVRTVVQVLGSDRGSVIGKTTDDHQLVVKGTPPSAALTN 60
          MDTS P+ FVNG LL   + ++VRTV+QV GS+ GSV+GK+TDD Q+VV+G+ P + LT 
Sbjct: 1  MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61 FVEVIGIAESDKSIQAEIWTSFGDTF 86
          ++EVIGIAESD +I+AE WT+FG+TF
Sbjct: 61 YLEVIGIAESDNAIRAETWTNFGNTF 86