Jatropha Genome Database

JcCB0211371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0211371.10 + phase: 0 /partial
         (180 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11760.1 | Symbols:  | unknown protein | chr3:3718529-3721123...   152   9e-38
AT2G10560.1 | Symbols:  | unknown protein | chr2:4109862-4110698...   137   4e-33
AT5G04860.1 | Symbols:  | unknown protein | chr5:1411760-1414459...   130   4e-31

>AT3G11760.1 | Symbols:  | unknown protein | chr3:3718529-3721123
           FORWARD
          Length = 702

 Score =  152 bits (385), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 19/168 (11%)

Query: 2   AIFNPEKFENLKGAMSFDDIWEDISSITEE------YD----HKVYIVSWNDHFFVLKAD 51
            + N  +FE L+GAMSFD IW +I S+ E       YD      VYIVSWNDHFFVLK +
Sbjct: 535 GMINEGRFEFLQGAMSFDSIWAEIISLEESSANGDSYDDDSPPHVYIVSWNDHFFVLKVE 594

Query: 52  LDAYYIIDSLGERLFEGCNQAYILKFDESTIMYEKVRKEIDSEEQTAAEKGKDEQDTQEI 111
            +AYYIID+LGERL+EGC+QAY+LKFD  T++++ +  E         E G + +   EI
Sbjct: 595 KEAYYIIDTLGERLYEGCDQAYVLKFDHKTVIHKILHTE---------EAGSESEPESEI 645

Query: 112 ICKGKECCKEFIKRFLAAIPXXXXXXXXXXRKVSTFSLLQRLQIDFHY 159
           + +GKE CKE+IK FLAAIP             ST  +  RLQI+FHY
Sbjct: 646 LSRGKESCKEYIKNFLAAIPIRELQEDIKKGLASTAPVHHRLQIEFHY 693


>AT2G10560.1 | Symbols:  | unknown protein | chr2:4109862-4110698
           REVERSE
          Length = 278

 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 99/165 (60%), Gaps = 19/165 (11%)

Query: 12  LKGAMSFDDIWEDISSITEE---YDHKVYIVSWNDHFFVLKADLDAYYIIDSLGERLFEG 68
           LKG MSFD IWE+I     E    +H +YIVSWNDH+FVL  + DAYYIID+LGER++EG
Sbjct: 60  LKGVMSFDSIWEEIMKQEPEESASEHVIYIVSWNDHYFVLLVNHDAYYIIDTLGERVYEG 119

Query: 69  CNQAYILKFDE--------STI------MYEKVRKEIDSEEQTAAEKGKDEQDTQEIICK 114
           CNQAY+LKFD+        S I      M  + +   +  EQ    K  +EQ  + ++C+
Sbjct: 120 CNQAYVLKFDQDAEIKRLPSVIKDNKADMGSQKQGGKNKYEQPERSKESEEQGEEVVVCR 179

Query: 115 GKECCKEFIKRFLAAIPXXXXXXXXXXRKVSTFSLLQRLQIDFHY 159
           GKE C+E+IK FLAAIP            VS+F    RLQI+ +Y
Sbjct: 180 GKESCREYIKSFLAAIPIQQVKADMKEGLVSSFH--HRLQIELYY 222


>AT5G04860.1 | Symbols:  | unknown protein | chr5:1411760-1414459
           REVERSE
          Length = 782

 Score =  130 bits (328), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 79/165 (47%), Positives = 97/165 (58%), Gaps = 19/165 (11%)

Query: 12  LKGAMSFDDIWEDISSITEEYDHK---VYIVSWNDHFFVLKADLDAYYIIDSLGERLFEG 68
           LKG MSFD IWE++     E       +YIVSWNDHFFVL  + DAYYIID+LGERL+EG
Sbjct: 564 LKGVMSFDSIWEELMKQEPEESASEPVIYIVSWNDHFFVLLVNHDAYYIIDTLGERLYEG 623

Query: 69  CNQAYILKFDESTIMYE--KVRKE--IDSEEQTAAEKGKDEQ----------DTQEIICK 114
           CNQAY+LKFD+   +     V K+   D   Q    K K EQ          + +E++C+
Sbjct: 624 CNQAYVLKFDKDAEIKRLPSVIKDNKADMGNQKQGGKNKSEQPERSKESEEQEEEEVVCR 683

Query: 115 GKECCKEFIKRFLAAIPXXXXXXXXXXRKVSTFSLLQRLQIDFHY 159
           GKE C+E+IK FLAAIP            VS  SL  RLQI+ HY
Sbjct: 684 GKESCREYIKSFLAAIPIQQVKADMKKGLVS--SLHHRLQIELHY 726