Jatropha Genome Database

JcCB0209291.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0209291.10 + phase: 0 /partial
         (166 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04460.1 | Symbols: PEX12, ATPEX12, APM4 | PEX12; protein bin...   237   3e-63

>AT3G04460.1 | Symbols: PEX12, ATPEX12, APM4 | PEX12; protein
           binding / zinc ion binding | chr3:1186641-1189094
           FORWARD
          Length = 393

 Score =  237 bits (604), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/170 (69%), Positives = 140/170 (82%), Gaps = 5/170 (2%)

Query: 1   MLFQVGGQGTRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPLLHKVLDYEDEFFALLM 60
           MLFQVGG+GTRPTFFEMAAAQQLPASLRAALTYS+GV ALRR  LHK+LDYEDEFFA LM
Sbjct: 1   MLFQVGGEGTRPTFFEMAAAQQLPASLRAALTYSLGVFALRRSFLHKILDYEDEFFAALM 60

Query: 61  LVLETHSLRITDASFSESLYGLRRRAVKIKAKNLS----SGEAIELSGLQKHQRVLSVAF 116
           L+LE HSLR TD SF+ESLYGLRR++ +++ +  S    S E ++ SGL+K QR+LSV F
Sbjct: 61  LILEGHSLRTTDGSFAESLYGLRRKSARLRLRKDSARKDSSEEVQHSGLEKRQRILSVVF 120

Query: 117 LVVLPYFKSKLHSIYNKERDARLQSSLWG-DDAIFENFDSHRGEDPLVSR 165
           LVVLPYFKSKLH+IYNKER+ARL+ SLWG +D  F+  D   G+D +VSR
Sbjct: 121 LVVLPYFKSKLHAIYNKEREARLRESLWGAEDQGFDEADFFTGDDSIVSR 170