Jatropha Genome Database

JcCB0207431.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0207431.30 - phase: 1 /pseudo/partial
         (102 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00090.1 | Symbols:  | transducin family protein / WD-40 repe...    50   4e-07

>AT4G00090.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr4:34234-36594 FORWARD
          Length = 430

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 27/38 (71%)

Query: 60  GEITWMAWAPKAIPTGNGQGLVLATASVDKKVKLWAAP 97
           G+IT ++WAPKAI  G    +VL T+  DKKVKLW AP
Sbjct: 388 GDITCISWAPKAITVGERHAMVLGTSGDDKKVKLWEAP 425