Jatropha Genome Database

JcCB0207251.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0207251.30 + phase: 0 /partial
         (64 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47460.1 | Symbols: ATSMC2 | ATSMC2; transporter | chr3:17486...   120   2e-28
AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | SMC2 (STRU...   118   7e-28

>AT3G47460.1 | Symbols: ATSMC2 | ATSMC2; transporter |
            chr3:17486765-17493178 FORWARD
          Length = 1171

 Score =  120 bits (300), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/58 (94%), Positives = 58/58 (100%)

Query: 1    VDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTV 58
            VDAALDLSHTQNIGRMIK+HFPHSQFIVVSLKEGMF+NA+VLFRTKFVDGVSTVQRTV
Sbjct: 1110 VDAALDLSHTQNIGRMIKSHFPHSQFIVVSLKEGMFSNADVLFRTKFVDGVSTVQRTV 1167


>AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | SMC2
            (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter |
            chr5:25056308-25062436 FORWARD
          Length = 1175

 Score =  118 bits (296), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 60/64 (93%), Positives = 61/64 (95%), Gaps = 1/64 (1%)

Query: 1    VDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAA 60
            VDAALDLSHTQNIGRMI+AHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTV  
Sbjct: 1113 VDAALDLSHTQNIGRMIRAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTV-T 1171

Query: 61   KQNK 64
            KQ K
Sbjct: 1172 KQTK 1175