Jatropha Genome Database

JcCB0207251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0207251.10 + phase: 0 /pseudo/partial
         (292 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | SMC2 (STRU...   271   4e-73
AT3G47460.1 | Symbols: ATSMC2 | ATSMC2; transporter | chr3:17486...   265   2e-71

>AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | SMC2
            (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter |
            chr5:25056308-25062436 FORWARD
          Length = 1175

 Score =  271 bits (693), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/208 (66%), Positives = 164/208 (78%)

Query: 85   KERASLESQLGSLRMQINHLNLEVEEQKSKVASVRNTHDEAHSELELIRLKMKECDSQIN 144
            +E++SLES L SL  QI+ L  EV+EQ++KV +++  HDE+ +EL+LI  KMKECD+QI+
Sbjct: 829  QEQSSLESHLTSLETQISTLTSEVDEQRAKVDALQKIHDESLAELKLIHAKMKECDTQIS 888

Query: 145  SFLKEQQKLQQKVSETKLERKKLENEVKRMEMQQKDCSTKVDKLIEKHAWIASEKQLFGR 204
             F+ +Q+K  QK+S+ KLERKKLENEV RME   KDCS KVDKL+EKH WIASEKQLFG+
Sbjct: 889  GFVTDQEKCLQKLSDMKLERKKLENEVVRMETDHKDCSVKVDKLVEKHTWIASEKQLFGK 948

Query: 205  SGTDYDFMSRDPKKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIEN 264
             GTDYDF S DP  ARE+LEKLQ++QSGLEKRVNKKVMAMFEKAEDEYN L+SKKN IEN
Sbjct: 949  GGTDYDFESCDPYVAREKLEKLQSDQSGLEKRVNKKVMAMFEKAEDEYNALISKKNTIEN 1008

Query: 265  DKSKIKKVIXXXXXXXXXXXXVTWVKVN 292
            DKSKI KVI            VTWVKVN
Sbjct: 1009 DKSKITKVIEELDEKKKETLKVTWVKVN 1036


>AT3G47460.1 | Symbols: ATSMC2 | ATSMC2; transporter |
            chr3:17486765-17493178 FORWARD
          Length = 1171

 Score =  265 bits (678), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 140/235 (59%), Positives = 176/235 (74%), Gaps = 5/235 (2%)

Query: 62   LQKISRDMK----MKNRGLLWNRKLSLKERASLESQLGSLRMQINHLNLEVEEQKSKVAS 117
            +Q  S+D+K    ++ R L+  ++   +E++ L+SQL SLR QI+ L  +V  Q++KV +
Sbjct: 800  IQASSKDLKGHENVRER-LVMEQEAVTQEQSYLKSQLTSLRTQISTLASDVGNQRAKVDA 858

Query: 118  VRNTHDEAHSELELIRLKMKECDSQINSFLKEQQKLQQKVSETKLERKKLENEVKRMEMQ 177
            ++  HD++ SEL+LI  KMKECD+QI+  + EQ+K  QK+S+ KL+RKKLENEV RMEM+
Sbjct: 859  IQKDHDQSLSELKLIHAKMKECDTQISGSIAEQEKCLQKISDMKLDRKKLENEVTRMEME 918

Query: 178  QKDCSTKVDKLIEKHAWIASEKQLFGRSGTDYDFMSRDPKKAREELEKLQAEQSGLEKRV 237
             K+CS KVDKL+EKH WI SEK+LFG  GTDYDF SRDP KAREELE+LQ +QS LEKRV
Sbjct: 919  HKNCSVKVDKLVEKHTWITSEKRLFGNGGTDYDFESRDPHKAREELERLQTDQSSLEKRV 978

Query: 238  NKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIXXXXXXXXXXXXVTWVKVN 292
            NKKV AMFEKAEDEYN LM+KKNIIE DKSKIKKVI            VTWVKVN
Sbjct: 979  NKKVTAMFEKAEDEYNALMTKKNIIETDKSKIKKVIEELDEKKKETLKVTWVKVN 1033