Jatropha Genome Database

JcCB0206951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0206951.10 - phase: 0 
         (212 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29820.1 | Symbols: CFIM-25, ATCFIM-25 | CFIM-25 | chr4:14596...   298   2e-81
AT4G25550.1 | Symbols:  | protein binding | chr4:13048519-130508...   228   2e-60

>AT4G29820.1 | Symbols: CFIM-25, ATCFIM-25 | CFIM-25 |
           chr4:14596047-14597317 REVERSE
          Length = 222

 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 138/193 (71%), Positives = 171/193 (88%), Gaps = 2/193 (1%)

Query: 20  VLDIYPLSSYYFGAKDPLSFKNETLADRVQRMKSNYLAHGLRTYVEAVILVELFKHPHLL 79
           ++D+YPLSSYYFG+K+ L  K+E ++DRV R+KSNY AHGLRT VEAV+LVELFKHPH+L
Sbjct: 28  MVDLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVL 87

Query: 80  LLQIRNSIFRLPGGRLRPGESDIDGLKRKLSRKLSGNED--ETDWEVDECLGMWWKPDFE 137
           LLQ RNSIF+LPGGRLRPGESDI+GLKRKL+ KLS NE+   + +EV EC+GMWW+P+FE
Sbjct: 88  LLQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFE 147

Query: 138 TLPYPYMPPNVKTPKECTKLFLVRLPMSRKFIVPKNLKLLAIPLCQIHENHKTYGSIISG 197
           TL YP++PPN+K PKECTKLFLVRLP+ ++F+VPKN KLLA+PLCQ+HEN KTYG I+S 
Sbjct: 148 TLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQ 207

Query: 198 IPQLLSKFSFNII 210
           IP+LLSKFSFN++
Sbjct: 208 IPKLLSKFSFNMM 220


>AT4G25550.1 | Symbols:  | protein binding | chr4:13048519-13050873
           FORWARD
          Length = 200

 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 105/195 (53%), Positives = 144/195 (73%), Gaps = 2/195 (1%)

Query: 20  VLDIYPLSSYYFGAKDPLSFKNETLADRVQRMKSNYLAHGLRTYVEAVILVELFKHPHLL 79
           V++ YPLS+Y FG K+P   K+ ++ADR+ RMK NY+  G+RT VE ++LV+   HPH+L
Sbjct: 6   VVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHIL 65

Query: 80  LLQIRNSIFRLPGGRLRPGESDIDGLKRKLSRKLSGNEDET--DWEVDECLGMWWKPDFE 137
           LLQI N+  +LPGGRL+PGE++ DGLKRKL+ KL GN      DW V EC+  WW+P+FE
Sbjct: 66  LLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFE 125

Query: 138 TLPYPYMPPNVKTPKECTKLFLVRLPMSRKFIVPKNLKLLAIPLCQIHENHKTYGSIISG 197
           T+ YPY PP++  PKEC +L++V L     F VPKNLKLLA+PL ++++N + YG +IS 
Sbjct: 126 TMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVIST 185

Query: 198 IPQLLSKFSFNIINS 212
           IPQ LS+F FN+I+S
Sbjct: 186 IPQQLSRFHFNMISS 200