Jatropha Genome Database

JcCB0205061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0205061.10 + phase: 0 
         (95 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55020.1 | Symbols: LOX1 | LOX1; lipoxygenase | chr1:20525798...    70   3e-13
AT3G22400.1 | Symbols: LOX5 | LOX5; electron carrier/ iron ion b...    60   3e-10

>AT1G55020.1 | Symbols: LOX1 | LOX1; lipoxygenase |
          chr1:20525798-20530143 FORWARD
          Length = 859

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/48 (62%), Positives = 41/48 (85%)

Query: 27 KKITGSVVLMKKNVLDFNDFHASLLDRVHELFGHGVSLQLISSVTSES 74
          KK+ G+VVLMKKNVLDFNDF+AS LDR+HE  G+ ++L+L+SS  ++S
Sbjct: 19 KKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVSSDVTDS 66


>AT3G22400.1 | Symbols: LOX5 | LOX5; electron carrier/ iron ion
          binding / lipoxygenase/ metal ion binding /
          oxidoreductase, acting on single donors with
          incorporation of molecular oxygen, incorporation of two
          atoms of oxygen | chr3:7927011-7931167 FORWARD
          Length = 886

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 33/42 (78%)

Query: 28 KITGSVVLMKKNVLDFNDFHASLLDRVHELFGHGVSLQLISS 69
          KI G VV+MKKN+LDF D  ASLLDRV+EL G  VSL LISS
Sbjct: 34 KIEGEVVVMKKNLLDFKDVMASLLDRVNELLGRRVSLHLISS 75