Jatropha Genome Database

JcCB0203531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0203531.10 + phase: 0 /partial
         (148 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32330.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    71   2e-13
AT4G32330.3 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    71   2e-13
AT4G32330.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    71   2e-13
AT2G25480.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    65   1e-11

>AT4G32330.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Targeting for Xklp2
           (InterPro:IPR009675); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT2G25480.1); Has 4582
           Blast hits to 3307 proteins in 347 species: Archae - 4;
           Bacteria - 425; Metazoa - 2127; Fungi - 421; Plants -
           244; Viruses - 22; Other Eukaryotes - 1339 (source: NCBI
           BLink). | chr4:15609801-15611867 FORWARD
          Length = 436

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 55/76 (72%), Gaps = 5/76 (6%)

Query: 1   IPPTRPKSPKLGRRKSSSPVDSEGNNGENSRPGRLSLDEKVS-TNRSAKG--PSPIHSKK 57
           IPPTRPKSPKLGR+K++S  DSE    +  R GRLSLDE+ S  N +AKG  P+    K+
Sbjct: 281 IPPTRPKSPKLGRKKTASGADSE--ETQTPRLGRLSLDERASKDNPTAKGIMPTVDLKKQ 338

Query: 58  PQRKSLPKLPSEKTSL 73
           P RKSLP+LPS+KT L
Sbjct: 339 PVRKSLPRLPSQKTVL 354


>AT4G32330.3 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Targeting for Xklp2
           (InterPro:IPR009675); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT2G25480.1); Has 4728
           Blast hits to 3313 proteins in 331 species: Archae - 4;
           Bacteria - 347; Metazoa - 2216; Fungi - 461; Plants -
           233; Viruses - 22; Other Eukaryotes - 1445 (source: NCBI
           BLink). | chr4:15609801-15611867 FORWARD
          Length = 437

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 55/76 (72%), Gaps = 5/76 (6%)

Query: 1   IPPTRPKSPKLGRRKSSSPVDSEGNNGENSRPGRLSLDEKVS-TNRSAKG--PSPIHSKK 57
           IPPTRPKSPKLGR+K++S  DSE    +  R GRLSLDE+ S  N +AKG  P+    K+
Sbjct: 282 IPPTRPKSPKLGRKKTASGADSE--ETQTPRLGRLSLDERASKDNPTAKGIMPTVDLKKQ 339

Query: 58  PQRKSLPKLPSEKTSL 73
           P RKSLP+LPS+KT L
Sbjct: 340 PVRKSLPRLPSQKTVL 355


>AT4G32330.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Targeting for Xklp2
           (InterPro:IPR009675); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT2G25480.1); Has 4728
           Blast hits to 3313 proteins in 331 species: Archae - 4;
           Bacteria - 347; Metazoa - 2216; Fungi - 461; Plants -
           233; Viruses - 22; Other Eukaryotes - 1445 (source: NCBI
           BLink). | chr4:15609801-15611867 FORWARD
          Length = 437

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 55/76 (72%), Gaps = 5/76 (6%)

Query: 1   IPPTRPKSPKLGRRKSSSPVDSEGNNGENSRPGRLSLDEKVS-TNRSAKG--PSPIHSKK 57
           IPPTRPKSPKLGR+K++S  DSE    +  R GRLSLDE+ S  N +AKG  P+    K+
Sbjct: 282 IPPTRPKSPKLGRKKTASGADSE--ETQTPRLGRLSLDERASKDNPTAKGIMPTVDLKKQ 339

Query: 58  PQRKSLPKLPSEKTSL 73
           P RKSLP+LPS+KT L
Sbjct: 340 PVRKSLPRLPSQKTVL 355


>AT2G25480.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           Targeting for Xklp2 (InterPro:IPR009675); BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT4G32330.2); Has 1787 Blast hits to 1426 proteins
           in 179 species: Archae - 0; Bacteria - 73; Metazoa -
           901; Fungi - 138; Plants - 185; Viruses - 2; Other
           Eukaryotes - 488 (source: NCBI BLink). |
           chr2:10843449-10845343 FORWARD
          Length = 403

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 53/79 (67%), Gaps = 3/79 (3%)

Query: 1   IPPTRPKSPKLGRRKSSSPVDSE-GNNGENSRPGRLSLDEKV-STNRSAKGPSPIHSKKP 58
           I  TRPKSPKLGR+K++S  DSE     +  R GRLSLDEK    N   +G  P  +KKP
Sbjct: 257 IAITRPKSPKLGRKKTNSRADSEEAITIQTPRFGRLSLDEKTPKDNPVVEGSVPGETKKP 316

Query: 59  -QRKSLPKLPSEKTSLSNA 76
             RKSLP+LPSEKT+LSN 
Sbjct: 317 PVRKSLPRLPSEKTNLSNG 335