Jatropha Genome Database

JcCB0203341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0203341.10 + phase: 0 /partial
         (127 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08900.1 | Symbols:  | arginase | chr4:5703499-5705180 FORWARD     220   2e-58
AT4G08870.1 | Symbols:  | arginase, putative | chr4:5646654-5648...   205   5e-54
AT4G08870.2 | Symbols:  | arginase, putative | chr4:5647417-5648...    59   1e-09

>AT4G08900.1 | Symbols:  | arginase | chr4:5703499-5705180 FORWARD
          Length = 342

 Score =  220 bits (560), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/127 (85%), Positives = 113/127 (88%)

Query: 1   RPFQGGFGSITKEGRGQGKRFGVDQYEMGPFSRDPQLLENLKLGEGAKGVYISIDVDCLD 60
           R  Q G  SI +EGR QGKRFGV+QYEM  FS+D  +LENLKLGEG KGVYISIDVDCLD
Sbjct: 216 RLLQVGIRSINQEGREQGKRFGVEQYEMRTFSKDRPMLENLKLGEGVKGVYISIDVDCLD 275

Query: 61  PAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRE 120
           PAFAPGVSHIEPGGLSFRDVLNILHNLQADVV ADVVEFNPQRDTVDGMTAMVAAKLVRE
Sbjct: 276 PAFAPGVSHIEPGGLSFRDVLNILHNLQADVVGADVVEFNPQRDTVDGMTAMVAAKLVRE 335

Query: 121 LTAKISK 127
           L AKISK
Sbjct: 336 LAAKISK 342


>AT4G08870.1 | Symbols:  | arginase, putative | chr4:5646654-5648693
           REVERSE
          Length = 344

 Score =  205 bits (522), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 107/127 (84%)

Query: 1   RPFQGGFGSITKEGRGQGKRFGVDQYEMGPFSRDPQLLENLKLGEGAKGVYISIDVDCLD 60
           R  Q G  SI KEGR QGKRFGV+QYEM  FS+D Q+LENLKLGEG KGVYISIDVDCLD
Sbjct: 218 RLLQVGIRSINKEGREQGKRFGVEQYEMRTFSKDRQMLENLKLGEGVKGVYISIDVDCLD 277

Query: 61  PAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRE 120
           P FA GVSH EPGGLSFRDVLNILHNLQ D+V ADVVE+NPQRDT D MTAMVAAK VRE
Sbjct: 278 PGFAHGVSHFEPGGLSFRDVLNILHNLQGDLVGADVVEYNPQRDTADDMTAMVAAKFVRE 337

Query: 121 LTAKISK 127
           L AK+SK
Sbjct: 338 LAAKMSK 344


>AT4G08870.2 | Symbols:  | arginase, putative | chr4:5647417-5648693
           REVERSE
          Length = 263

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 31/41 (75%)

Query: 1   RPFQGGFGSITKEGRGQGKRFGVDQYEMGPFSRDPQLLENL 41
           R  Q G  SI KEGR QGKRFGV+QYEM  FS+D Q+LENL
Sbjct: 218 RLLQVGIRSINKEGREQGKRFGVEQYEMRTFSKDRQMLENL 258