Jatropha Genome Database

JcCB0202011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0202011.10 + phase: 0 /partial
         (212 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36810.1 | Symbols:  | binding | chr2:15425739-15439462 REVERSE    224   2e-59

>AT2G36810.1 | Symbols:  | binding | chr2:15425739-15439462 REVERSE
          Length = 1716

 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/208 (54%), Positives = 141/208 (67%), Gaps = 3/208 (1%)

Query: 1    ICMNTKIRATAFAAFGALSSYGVGAQREIFLEQIHAATPRLVLHLHDDDISVRHACRNTL 60
            + M+ K+RA AF+A GALS Y  G QRE F+EQIH+  PRLV+HLHDDD S+R ACR TL
Sbjct: 1506 VSMDPKMRANAFSALGALSKYATGGQREGFVEQIHSTLPRLVVHLHDDDPSIRQACRVTL 1565

Query: 61   KHIAPLMKIEGLASLSNSHCCNSDHRSDYEGFLRDFTRLLTQYLPSRVDSYMASTIQAID 120
            K  APL+ I   ++L +S    S+ R+DYE F+RD ++ L Q    RVD+YMASTIQA D
Sbjct: 1566 KRFAPLVDIINYSTLYDSRAFGSEDRTDYENFVRDLSKHLVQE-SERVDTYMASTIQAFD 1624

Query: 121  APWPIIQANXXXXXXXXXXXXDDPRILALYYAQVFGMLVGKMNQSADAVVRATCSSALGL 180
            APWP+IQAN            +D  I++LYY QVF  LV KM +S D+VVRA CSSA GL
Sbjct: 1625 APWPVIQANAIHFSTTMLSLSEDQHIISLYYPQVFETLVSKMTRSQDSVVRAACSSAFGL 1684

Query: 181  LLRSTNSLSWRTARLDRDRVESSRRTHD 208
            LLRS+ S  WR ARL  D  +S R+ +D
Sbjct: 1685 LLRSSKSTLWRGARL--DGTDSGRKAND 1710