Jatropha Genome Database

JcCB0201931.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0201931.20 + phase: 0 /partial
         (179 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08340.2 | Symbols:  | riboflavin biosynthesis protein-relate...   175   1e-44
AT5G08340.1 | Symbols:  | riboflavin biosynthesis protein-relate...   175   1e-44
AT5G23330.1 | Symbols:  | riboflavin biosynthesis protein-relate...   133   5e-32

>AT5G08340.2 | Symbols:  | riboflavin biosynthesis protein-related |
           chr5:2683901-2685682 FORWARD
          Length = 351

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/150 (58%), Positives = 110/150 (73%), Gaps = 5/150 (3%)

Query: 1   MLSGGSRISLHLRECNLHHHQGFGLGFCSTRFIRLSSFMFRPSSVTIIGVADSNCYFPHR 60
           ML GGSR+  HL + N H+  G GLGFC  + ++LSSF  RPS      +A S+ +F  +
Sbjct: 1   MLCGGSRVLQHLSDHNHHNSIGLGLGFCGAKIVQLSSFFLRPSQ----AMAKSH-HFSRK 55

Query: 61  LQQRMVXXXXXXXXXPGEIPIMPDCLSQQEDDNELPSQGLFPLAGGIVALGKFDALHIGH 120
           L+QRM+          GE+PI+ +C SQ+EDD ELP +GL P++GGIVALGKFDALHIGH
Sbjct: 56  LRQRMISSFGSHCRTSGEVPILHNCFSQREDDPELPVEGLSPVSGGIVALGKFDALHIGH 115

Query: 121 RELAIQASKVGSPYLLSFVGMAEVLGWEPR 150
           REL IQAS++G+PYLLSFVGMAEVLGWEPR
Sbjct: 116 RELTIQASRIGAPYLLSFVGMAEVLGWEPR 145


>AT5G08340.1 | Symbols:  | riboflavin biosynthesis protein-related |
           chr5:2683901-2685604 FORWARD
          Length = 367

 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/150 (58%), Positives = 110/150 (73%), Gaps = 5/150 (3%)

Query: 1   MLSGGSRISLHLRECNLHHHQGFGLGFCSTRFIRLSSFMFRPSSVTIIGVADSNCYFPHR 60
           ML GGSR+  HL + N H+  G GLGFC  + ++LSSF  RPS      +A S+ +F  +
Sbjct: 1   MLCGGSRVLQHLSDHNHHNSIGLGLGFCGAKIVQLSSFFLRPSQ----AMAKSH-HFSRK 55

Query: 61  LQQRMVXXXXXXXXXPGEIPIMPDCLSQQEDDNELPSQGLFPLAGGIVALGKFDALHIGH 120
           L+QRM+          GE+PI+ +C SQ+EDD ELP +GL P++GGIVALGKFDALHIGH
Sbjct: 56  LRQRMISSFGSHCRTSGEVPILHNCFSQREDDPELPVEGLSPVSGGIVALGKFDALHIGH 115

Query: 121 RELAIQASKVGSPYLLSFVGMAEVLGWEPR 150
           REL IQAS++G+PYLLSFVGMAEVLGWEPR
Sbjct: 116 RELTIQASRIGAPYLLSFVGMAEVLGWEPR 145


>AT5G23330.1 | Symbols:  | riboflavin biosynthesis protein-related |
           chr5:7854194-7855738 FORWARD
          Length = 354

 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/150 (51%), Positives = 93/150 (62%), Gaps = 21/150 (14%)

Query: 1   MLSGGSRISLHLRECNLHHHQGFGLGFCSTRFIRLSSFMFRPSSVTIIGVADSNCYFPHR 60
           ML GGSR S+HL +    H     LG    + +R SSFM RP S                
Sbjct: 1   MLCGGSRASVHLWD----HRHPPRLG---AKVLRKSSFMLRPCSAIS------------- 40

Query: 61  LQQRMVXXXXXXXXXPGEIPIMPDCLSQQEDDNELPSQGLFPLAGGIVALGKFDALHIGH 120
            QQR+          P +IP   DC SQ +D  EL ++GL P+AGGIVALGKFDALHIGH
Sbjct: 41  -QQRIKSSFRSHCKTPRKIPAPLDCFSQGDDHPELSAEGLSPVAGGIVALGKFDALHIGH 99

Query: 121 RELAIQASKVGSPYLLSFVGMAEVLGWEPR 150
           RELAIQA+++G+PYLLSFVG+AEVLGW+PR
Sbjct: 100 RELAIQAARIGTPYLLSFVGLAEVLGWKPR 129