Jatropha Genome Database

JcCB0201851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0201851.10 - phase: 0 /TE/partial
         (323 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00980.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...    58   8e-09

>AT4G00980.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr4:422732-424580 REVERSE
          Length = 488

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 113/289 (39%), Gaps = 38/289 (13%)

Query: 7   KMISLNGAKYHIWRNKMRDLLMVTKM------HLPVFGSSK----------LEDKTDEEW 50
           K+   +G  Y  W ++M   L   K+        P  GSS+            D T ++W
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKW 253

Query: 51  AFEHEQVCGYIRQFVDDNVYNHICNE-THARTLWDKLEQLYASKSGNNQLFYLTKLMNFK 109
             +      ++   + D++Y     +  HA+ LWD+L+ +Y      ++   + K + F+
Sbjct: 254 LRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFR 313

Query: 110 YQEGTFVADHLSEMQVTIHQLSNMGIKFDDKILGLMVLASLPESWETLKISITNSTPHSG 169
             E   + + +         + + G+  D+      +++  P SW      +        
Sbjct: 314 MVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEE--EYL 371

Query: 170 VSWEFVKNAVLNEEMRRKAQN-----PSSSQSDI----FLADAKRNNQPRGRSQSRSSNT 220
             W  ++     EE+ R         P++  S +     L    R +Q  G    R    
Sbjct: 372 PVWMLMERVKAEEELLRNGAKGVTYRPATGSSQMERTPSLGTTHRGSQSVG--WKRKEPE 429

Query: 221 RDKSRGRSNKFVNIVCHHCGKKGHIKRYCRKFKSDQEKIKGKAKKEESS 269
           RD+        V IVC +CG+KGH+ ++C   KSD E+  GK+ +  SS
Sbjct: 430 RDER-------VIIVCDNCGRKGHLAKHCWGSKSD-ERASGKSNRINSS 470