Jatropha Genome Database

JcCB0200811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0200811.20 - phase: 0 /pseudo/partial
         (216 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75330.1 | Symbols: OTC | OTC (ORNITHINE CARBAMOYLTRANSFERASE...   366   e-102
AT3G20330.1 | Symbols:  | aspartate carabmoyltransferase, chloro...    60   1e-09

>AT1G75330.1 | Symbols: OTC | OTC (ORNITHINE CARBAMOYLTRANSFERASE);
           amino acid binding / carboxyl- or carbamoyltransferase/
           ornithine carbamoyltransferase | chr1:28266457-28268383
           REVERSE
          Length = 375

 Score =  366 bits (939), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 170/201 (84%), Positives = 185/201 (92%)

Query: 16  LFLLQDILDLAKYASVPVINGLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGDGNNIV 75
           +F  QDILDLA Y+SVPV+NGLTD+NHPCQIMADALTMIEHIGQ+EGTKVVYVGDGNN+V
Sbjct: 175 VFAHQDILDLANYSSVPVVNGLTDHNHPCQIMADALTMIEHIGQVEGTKVVYVGDGNNMV 234

Query: 76  HSWLLLASVIPFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDV 135
           HSWL LASVIPFHFVCACPKG+EPD + V KA+ AG+SKIEITNDPKEAV+GADVVYSDV
Sbjct: 235 HSWLELASVIPFHFVCACPKGYEPDKERVSKAKQAGLSKIEITNDPKEAVIGADVVYSDV 294

Query: 136 WASMGQKEEAAHRRKVFQGFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIV 195
           WASMGQK+EA  RRK FQGFQVDE LMK+AG KAYFMHCLPAERGVEVT+GV+EAP SIV
Sbjct: 295 WASMGQKDEAEARRKAFQGFQVDEALMKLAGQKAYFMHCLPAERGVEVTNGVVEAPYSIV 354

Query: 196 FPQAENRMHAQNAIMLHALGL 216
           FPQAENRMHAQNAIMLH LG 
Sbjct: 355 FPQAENRMHAQNAIMLHLLGF 375


>AT3G20330.1 | Symbols:  | aspartate carabmoyltransferase,
           chloroplast / aspartate transcarbamylase / ATCase (PYRB)
           | chr3:7090354-7091904 REVERSE
          Length = 390

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 19/191 (9%)

Query: 30  SVPVIN-GLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGD---GNNIVHSWLLLASV- 84
           ++PVIN G     HP Q + D  T+   IG+L+G  V  VGD   G  +     LLA   
Sbjct: 202 NIPVINAGDGPGEHPTQALLDVYTIQSEIGKLDGISVALVGDLANGRTVRSLAYLLAKFK 261

Query: 85  -IPFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDVWASMGQKE 143
            +  +FV       + D K    +  +G+ + E ++D  E     DVVY     +  Q+E
Sbjct: 262 DVKIYFVSPEIVKMKDDIKDYLTS--SGV-EWEESSDLMEVASKCDVVYQ----TRIQRE 314

Query: 144 EAAHRRKVFQG----FQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIVFPQA 199
               R  +++     + VD+DL+ +   KA  MH LP  R  E+T  V   P +  F QA
Sbjct: 315 RFGERLDLYEAARGKYIVDKDLLGVMQKKAIIMHPLP--RLDEITADVDADPRAAYFRQA 372

Query: 200 ENRMHAQNAIM 210
           +N +  + A++
Sbjct: 373 KNGLFIRMALL 383