Jatropha Genome Database
- JcCB0200451.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0200451.10 - phase: 0
(371 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67260.1 | Symbols: CYCD3;2 | CYCD3;2 (CYCLIN D3;2); cyclin-d... 373 e-103
AT3G50070.1 | Symbols: CYCD3;3 | CYCD3;3 (CYCLIN D3;3); cyclin-d... 338 3e-93
AT4G34160.1 | Symbols: CYCD3;1, CYCD3 | CYCD3;1 (CYCLIN D3;1); c... 305 2e-83
AT2G22490.1 | Symbols: CYCD2;1, ATCYCD2;1 | CYCD2;1 (Cyclin D2;1... 165 4e-41
AT1G70210.1 | Symbols: CYCD1;1 | CYCD1;1 (CYCLIN D1;1); cyclin-d... 155 5e-38
AT5G65420.1 | Symbols: CYCD4;1 | CYCD4;1 (CYCLIN D4;1); cyclin-d... 142 5e-34
AT5G10440.1 | Symbols: CYCD4;2 | CYCD4;2 (cyclin d4;2); cyclin-d... 123 2e-28
AT4G37630.2 | Symbols: CYCD5;1 | CYCD5;1 (cyclin d5;1); cyclin-d... 106 2e-23
AT4G37630.1 | Symbols: CYCD5;1 | CYCD5;1 (cyclin d5;1); cyclin-d... 104 1e-22
AT4G03270.1 | Symbols: CYCD6;1 | CYCD6;1 (Cyclin D6;1); cyclin-d... 102 5e-22
AT5G02110.1 | Symbols: CYCD7;1, CYCD7 | CYCD7;1 (CYCLIN D7;1); c... 87 2e-17
AT1G44110.1 | Symbols: CYCA1;1 | CYCA1;1 (Cyclin A1;1); cyclin-d... 57 2e-08
AT1G77390.1 | Symbols: CYCA1;2, CYCA1 | CYCA1;2 (CYCLIN A1;2); c... 53 4e-07
AT1G20610.1 | Symbols: CYCB2;3 | CYCB2;3 (Cyclin B2;3); cyclin-d... 52 6e-07
AT4G37490.1 | Symbols: CYC1, CYCB1;1, CYCB1 | CYCB1;1 (CYCLIN B1... 52 8e-07
AT3G11520.1 | Symbols: CYCB1;3, CYC2 | CYCB1;3 (CYCLIN B1;3); cy... 50 2e-06
AT5G25380.1 | Symbols: CYCA2;1 | CYCA2;1 (cyclin a2;1); cyclin-d... 50 3e-06
AT5G11300.1 | Symbols: CYC3B, CYC2BAT, CYCA2;2 | CYC3B (MITOTIC-... 49 4e-06
AT1G47230.1 | Symbols: CYCA3;4 | cyclin, putative | chr1:1730675... 49 5e-06
AT5G43080.1 | Symbols: CYCA3;1 | CYCA3;1 (Cyclin A3;1); cyclin-d... 49 5e-06
>AT5G67260.1 | Symbols: CYCD3;2 | CYCD3;2 (CYCLIN D3;2);
cyclin-dependent protein kinase | chr5:26836313-26837665
FORWARD
Length = 367
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/380 (53%), Positives = 258/380 (67%), Gaps = 22/380 (5%)
Query: 1 MALQEEENRQPSSPALVLDGLYCXXXXXXXXXDCVCSEIRGQIVKKES---PFSFLLLEQ 57
MAL++EE + VLDGLYC D + K + F FL L
Sbjct: 1 MALEKEEEASQNGAFCVLDGLYCEEETGFVEDDLDDDGDLDFLEKSDESVVKFQFLPLLD 60
Query: 58 DLFWEDNELLALISKEKDTHFDFHNIFSDGSSMVARKEAIDWVLRVKAHYGFTALTSVLA 117
W+D+E+L+LISKE +T+ F DG + RKEA+DWVLRVK+HYGFT+LT++LA
Sbjct: 61 MFLWDDDEILSLISKENETNPCFGEQILDGFLVSCRKEALDWVLRVKSHYGFTSLTAILA 120
Query: 118 VNYFDRFISTLKFPRDKPWMGQLAAVACLSLAAKVEETQVPLLLDLQVEESKYVFEAKTM 177
VNYFDRF++++K DKPWM QL AVA LSLAAKVEE QVPLLLDLQVEE++Y+FEAKT+
Sbjct: 121 VNYFDRFMTSIKLQTDKPWMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTI 180
Query: 178 KRMELLVLSTLQWRMNPVTPISFFDHIIRRLGLKNHLHWEFLRRCERLLLSVIADSRFTS 237
+RMELL+LSTLQWRM+PVTPISFFDHIIRR G K H +F R+CERLL+SVIAD+RF
Sbjct: 181 QRMELLILSTLQWRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRFMR 240
Query: 238 YLPSIFATAIMLHVIKEVEACNQVEYQNQLMAVIKISESTILQQDKVKECYKHILELSGS 297
Y PS+ ATAIM+ V +E++ C++VEYQ+Q+ ++K++ Q+KV ECY+ +LE
Sbjct: 241 YFPSVLATAIMILVFEELKPCDEVEYQSQITTLLKVN------QEKVNECYELLLE---- 290
Query: 298 QNSSSKRKHSWIP-SSPSGVIDAYFSCDSSNDSWAXXXXXXXXXXXR-----FKRNRVQD 351
N S KR + + SPSGV+D F DSSN SW KR RVQ+
Sbjct: 291 HNPSKKRMMNLVDQDSPSGVLD--FD-DSSNSSWNVSTTASVSSSSSSPEPLLKRRRVQE 347
Query: 352 QQMRLPSLNRMFVDVLSSPH 371
QQMRLPS+NRMF+DVLSSP
Sbjct: 348 QQMRLPSINRMFLDVLSSPR 367
>AT3G50070.1 | Symbols: CYCD3;3 | CYCD3;3 (CYCLIN D3;3);
cyclin-dependent protein kinase | chr3:18565322-18566669
REVERSE
Length = 361
Score = 338 bits (867), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 196/375 (52%), Positives = 257/375 (68%), Gaps = 23/375 (6%)
Query: 1 MALQEEENRQPSSPALVLDGLYCXXXXXXXXXDCVCSEIRGQIVKKESPFSFLLLEQDLF 60
MAL+EEE Q ++P VLDGL+C +C E V+K + L + D+
Sbjct: 1 MALEEEEESQ-NAPFCVLDGLFCEEESEFHEQVDLCDES----VEKFPFLNLGLSDHDML 55
Query: 61 WEDNELLALISKEKDTHFDFHNIFSDGSSMVARKEAIDWVLRVKAHYGFTALTSVLAVNY 120
W+D+EL LISK++ +D I D ++ R++A+DW+ +VK+HYGF +LT++LAVNY
Sbjct: 56 WDDDELSTLISKQEPCLYD--EILDDEFLVLCREKALDWIFKVKSHYGFNSLTALLAVNY 113
Query: 121 FDRFISTLKFPRDKPWMGQLAAVACLSLAAKVEETQVPLLLDLQVEESKYVFEAKTMKRM 180
FDRFI++ KF DKPWM QL A+ACLSLAAKVEE +VP LLD QVEE++YVFEAKT++RM
Sbjct: 114 FDRFITSRKFQTDKPWMSQLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRM 173
Query: 181 ELLVLSTLQWRMNPVTPISFFDHIIRRLGLKNHLHWEFLRRCERLLLSVIADSRFTSYLP 240
ELLVLSTL WRM+PVTPISFFDHIIRR K+H EFL RCE LLLS+I DSRF S+ P
Sbjct: 174 ELLVLSTLDWRMHPVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSP 233
Query: 241 SIFATAIMLHVIKEVEACNQVEYQNQLMAVIKISESTILQQDKVKECYKHILELSGSQNS 300
S+ ATAIM+ VI++++ C++ YQ+QLM ++K+ +KV +CY+ +L+ S S+
Sbjct: 234 SVLATAIMVSVIRDLKMCDEAVYQSQLMTLLKVD------SEKVNKCYELVLDHSPSK-- 285
Query: 301 SSKRKHSWI--PSSPSGVIDAYFSCDSSNDSWAXXXXXXXXXXXR----FKRNRVQDQQM 354
KR +W+ P+SP GV DA FS DSSN+SW KR RVQ+QQM
Sbjct: 286 --KRMMNWMQQPASPIGVFDASFSSDSSNESWVVSASASVSSSPSSEPLLKRRRVQEQQM 343
Query: 355 RLPSLNRMFVDVLSS 369
RL S+NRMF DVLSS
Sbjct: 344 RLSSINRMFFDVLSS 358
>AT4G34160.1 | Symbols: CYCD3;1, CYCD3 | CYCD3;1 (CYCLIN D3;1);
cyclin-dependent protein kinase regulator/ protein
binding | chr4:16357903-16359304 FORWARD
Length = 376
Score = 305 bits (782), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/309 (51%), Positives = 209/309 (67%), Gaps = 20/309 (6%)
Query: 4 QEEENRQPSSPALVLDGLYCXXXXXXXXXDCVCSEIRGQIVKKESPFSFLLLEQDLFWED 63
+EEE+R+ S + +LD LYC D E+ S F++L+QDLFWED
Sbjct: 5 KEEESREEQSNSFLLDALYCEEEKW----DDEGEEVEENSSLSSSSSPFVVLQQDLFWED 60
Query: 64 NELLALISKEKDTHFDFHNIFSDGSSMVARKEAIDWVLRVKAHYGFTALTSVLAVNYFDR 123
+L+ L SKE++ + D RKEA+ W+LRV AHYGF+ L +VLA+ Y D+
Sbjct: 61 EDLVTLFSKEEEQGL---SCLDDVYLSTDRKEAVGWILRVNAHYGFSTLAAVLAITYLDK 117
Query: 124 FISTLKFPRDKPWMGQLAAVACLSLAAKVEETQVPLLLDLQVEESKYVFEAKTMKRMELL 183
FI + RDKPWM QL +VACLSLAAKVEETQVPLLLD QVEE+KYVFEAKT++RMELL
Sbjct: 118 FICSYSLQRDKPWMLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELL 177
Query: 184 VLSTLQWRMNPVTPISFFDHIIRRLGLKNHLHWEFLRRCERLLLSVIADSRFTSYLPSIF 243
+LSTL+W+M+ +TPISF DHIIRRLGLKN+ HW+FL +C RLLLSVI+DSRF YLPS+
Sbjct: 178 ILSTLEWKMHLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDSRFVGYLPSVV 237
Query: 244 ATAIMLHVIKEVEACNQVEYQNQLMAVIKISESTILQQDKVKECYKHILELS----GSQ- 298
A A M+ +I++V+ + + YQ L+ V+ ++ ++KVK CY IL+L G Q
Sbjct: 238 AAATMMRIIEQVDPFDPLSYQTNLLGVLNLT------KEKVKTCYDLILQLPVDRIGLQI 291
Query: 299 --NSSSKRK 305
SS KRK
Sbjct: 292 QIQSSKKRK 300
>AT2G22490.1 | Symbols: CYCD2;1, ATCYCD2;1 | CYCD2;1 (Cyclin D2;1);
cyclin-dependent protein kinase regulator/ protein
binding | chr2:9554157-9555873 REVERSE
Length = 361
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 145/247 (58%), Gaps = 21/247 (8%)
Query: 83 IFSDGSSMVARKEAIDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAA 142
+ S + R +A+DW+L+V AHY F L L++NY DRF+++ + P+DK W QL A
Sbjct: 87 LLSGDLDLSVRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLA 146
Query: 143 VACLSLAAKVEETQVPLLLDLQVEESKYVFEAKTMKRMELLVLSTLQWRMNPVTPISFFD 202
V+CLSLA+K+EET VP ++DLQVE+ K+VFEAKT+KRMELLV++TL WR+ +TP SF D
Sbjct: 147 VSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFID 206
Query: 203 HIIRRLGLKNHLHWEFLRRCERLLLSVIADSRFTSYLPS--IFATAIMLHVIKEVEACNQ 260
+ + + + H+ + R R +L+ F + PS A A+ + + E E ++
Sbjct: 207 YFVDK--ISGHVSENLIYRSSRFILNTTKAIEFLDFRPSEIAAAAAVSVSISGETECIDE 264
Query: 261 VEYQNQLMAVIKISESTILQQDKVKECYKHILELSGSQN--------SSSKRKHSWIPSS 312
+ + L+ V +Q++VK C + L+G +N ++ +P+S
Sbjct: 265 EKALSSLIYV---------KQERVKRCLNLMRSLTGEENVRGTSLSQEQARVAVRAVPAS 315
Query: 313 PSGVIDA 319
P GV++A
Sbjct: 316 PVGVLEA 322
>AT1G70210.1 | Symbols: CYCD1;1 | CYCD1;1 (CYCLIN D1;1);
cyclin-dependent protein kinase regulator |
chr1:26440015-26441980 FORWARD
Length = 339
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 142/277 (51%), Gaps = 23/277 (8%)
Query: 33 DCVCSEIRGQIVKKESPFSFLLLEQDLFWEDNELLALISKEKDTHF----DFHNIFSDGS 88
D C E G + ES F E D W + + I E+ HF D+ + F S
Sbjct: 21 DLFCGEDSG-VFSGESTVDFSSSEVDS-WPGDSIACFIEDER--HFVPGHDYLSRFQTRS 76
Query: 89 -SMVARKEAIDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLS 147
AR++++ W+L+V+A+Y F LT+ LAVNY DRF+ + P W QL AVACLS
Sbjct: 77 LDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQLLAVACLS 136
Query: 148 LAAKVEETQVPLLLDLQVEESKYVFEAKTMKRMELLVLSTLQWRMNPVTPISFFDHIIRR 207
LAAK+EE VP L D QV KY+FEAKT+KRMELLVLS L WR+ VTP F +
Sbjct: 137 LAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYK 196
Query: 208 LGLKNHLHWEFLRRCERLLLSVIADSRFTSYLPSIFATAIMLHVIKEVEACNQVEYQNQL 267
+ F+ ++LS I ++ F Y PS A A +L V E+ + L
Sbjct: 197 IDPSGTFLGFFISHATEIILSNIKEASFLEYWPSSIAAAAILCVANELPS---------L 247
Query: 268 MAVIKISEST-----ILQQDKVKECYKHILELSGSQN 299
+V+ ES L ++K+ CY+ + ++ N
Sbjct: 248 SSVVNPHESPETWCDGLSKEKIVRCYRLMKAMAIENN 284
>AT5G65420.1 | Symbols: CYCD4;1 | CYCD4;1 (CYCLIN D4;1);
cyclin-dependent protein kinase regulator |
chr5:26141592-26143750 REVERSE
Length = 308
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 135/234 (57%), Gaps = 18/234 (7%)
Query: 91 VARKEAIDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLSLAA 150
V R++A++W+ + + F L LA+NY DRF+S P K W+ QL AVACLSLAA
Sbjct: 76 VGRRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAA 135
Query: 151 KVEETQVPLLLDLQVEESKYVFEAKTMKRMELLVLSTLQWRMNPVTPISFFDHIIRRLG- 209
K+EET+VP+L+DLQV + ++VFEAK+++RMELLVL+ L+WR+ +TP S+ + +R++
Sbjct: 136 KIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSK 195
Query: 210 LKNHLHWEFLRRCERLLLSVIADSRFTSYLPSIFATAIMLHVIKEVEACNQVEYQNQLMA 269
+ R +++ S F + PS A A+ L V E++ +V + N +
Sbjct: 196 CDQEPSNTLISRSLQVIASTTKGIDFLEFRPSEVAAAVALSVSGELQ---RVHFDNSSFS 252
Query: 270 VIKISESTILQQDKVKECYKHILELSGSQNSSSKRKHSWIPSSPSGVIDAYFSC 323
+ ++LQ+++VK+ ++E GS S +P+GV++ C
Sbjct: 253 PL----FSLLQKERVKK-IGEMIESDGSDLCS---------QTPNGVLEVSACC 292
>AT5G10440.1 | Symbols: CYCD4;2 | CYCD4;2 (cyclin d4;2);
cyclin-dependent protein kinase | chr5:3280611-3282342
REVERSE
Length = 298
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 93 RKEAIDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLSLAAKV 152
R +A+ W+ + F L LA+NY DRF+S P K W QL AVACLSLAAK+
Sbjct: 69 RIQALGWIWKACEELQFGPLCICLAMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKI 128
Query: 153 EETQVPLLLDLQVEESKYVFEAKTMKRMELLVLSTLQWRMNPVTPISFFDHIIRRL-GLK 211
EET VP L+ LQV +VFEAK+++RMELLVL+ L+WR+ VTP S+ + + ++ G
Sbjct: 129 EETNVPELMQLQVGAPMFVFEAKSVQRMELLVLNVLRWRLRAVTPCSYVRYFLSKINGYD 188
Query: 212 NHLHWEFLRRCERLLLSVIADSRFTSYLPSIFATAIMLHVIKE 254
H + R +++ S F + S A A+ L V E
Sbjct: 189 QEPHSRLVTRSLQVIASTTKGIDFLEFRASEIAAAVALSVSGE 231
>AT4G37630.2 | Symbols: CYCD5;1 | CYCD5;1 (cyclin d5;1);
cyclin-dependent protein kinase | chr4:17679497-17680788
FORWARD
Length = 321
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 10/233 (4%)
Query: 80 FHNIFSDGSSMVARKEAIDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQ 139
F + S +S R AIDW+L + +GF T+ +A++YFD F+ +D+ W +
Sbjct: 59 FETLPSKTTSSSDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGKDETWAMR 118
Query: 140 LAAVACLSLAAKVEETQVPLLLDLQVEESKYVFEAKTMKRMELLVLSTLQWRMNPVTPIS 199
L +VACLSLAAK+EE VP L ++ +VF+ +++ ELL+LSTL W+MN +TP
Sbjct: 119 LLSVACLSLAAKMEERIVPGLSQYP-QDHDFVFKPDVIRKTELLILSTLDWKMNLITPFH 177
Query: 200 FFDHIIRRLGLKNHLHWE--FLRRCERLLLSVIADSRFTSYLPSIFATAIMLHVIKEVEA 257
+F++ + ++ NH + L R LL++ + FT Y + A L +
Sbjct: 178 YFNYFLAKISQDNHSVSKDLVLLRSSDSLLALTKEISFTEYRQFVVAAVTTLLASSSTSS 237
Query: 258 CNQVEYQNQLMAVIKISESTILQQDKVKECYKHILELSGSQNSSSKRKHSWIP 310
++ + IS T + + V CY+ LE+ +RKH P
Sbjct: 238 DIRLTREEIANKFGSISWWTSNENENVYLCYQRTLEI-------EERKHMTPP 283
>AT4G37630.1 | Symbols: CYCD5;1 | CYCD5;1 (cyclin d5;1);
cyclin-dependent protein kinase | chr4:17679497-17680788
FORWARD
Length = 323
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 118/235 (50%), Gaps = 12/235 (5%)
Query: 80 FHNIFSDGSSMVARKEAIDWVLRVKAHYGFTALTSVLAVNYFDRFIST--LKFPRDKPWM 137
F + S +S R AIDW+L + +GF T+ +A++YFD F+ + +D+ W
Sbjct: 59 FETLPSKTTSSSDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWA 118
Query: 138 GQLAAVACLSLAAKVEETQVPLLLDLQVEESKYVFEAKTMKRMELLVLSTLQWRMNPVTP 197
+L +VACLSLAAK+EE VP L ++ +VF+ +++ ELL+LSTL W+MN +TP
Sbjct: 119 MRLLSVACLSLAAKMEERIVPGLSQYP-QDHDFVFKPDVIRKTELLILSTLDWKMNLITP 177
Query: 198 ISFFDHIIRRLGLKNHLHWE--FLRRCERLLLSVIADSRFTSYLPSIFATAIMLHVIKEV 255
+F++ + ++ NH + L R LL++ + FT Y + A L
Sbjct: 178 FHYFNYFLAKISQDNHSVSKDLVLLRSSDSLLALTKEISFTEYRQFVVAAVTTLLASSST 237
Query: 256 EACNQVEYQNQLMAVIKISESTILQQDKVKECYKHILELSGSQNSSSKRKHSWIP 310
+ ++ + IS T + + V CY+ LE+ +RKH P
Sbjct: 238 SSDIRLTREEIANKFGSISWWTSNENENVYLCYQRTLEI-------EERKHMTPP 285
>AT4G03270.1 | Symbols: CYCD6;1 | CYCD6;1 (Cyclin D6;1);
cyclin-dependent protein kinase | chr4:1432375-1433691
REVERSE
Length = 302
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 14/218 (6%)
Query: 80 FHNIFSDGSSMVARKEAIDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQ 139
FH++ S + R +AI + + + +LT LAVNY DRF+S+ P+ KPW+ +
Sbjct: 45 FHSLKSSAFLLSNRNQAISSITQYSRKFDDPSLT-YLAVNYLDRFLSSEDMPQSKPWILK 103
Query: 140 LAAVACLSLAAKVEETQVPLLLDLQVEESKYVFEAKTMKRMELLVLSTLQWRMNPVTPIS 199
L +++C+SL+AK+ + + + DL VE F+A+ ++RME ++L L+WRM VTP S
Sbjct: 104 LISLSCVSLSAKMRKPDMS-VSDLPVEGE--FFDAQMIERMENVILGALKWRMRSVTPFS 160
Query: 200 FFDHIIRRLGLKNH----LHWEFLRRCERLLLSVIADSRFTSYLPSIFATAIMLHVIKEV 255
F I LK L + L S+ D F + PS+ A A +L E+
Sbjct: 161 FLAFFISLFELKEEDPLLLKHSLKSQTSDLTFSLQHDISFLEFKPSVIAGAALLFASFEL 220
Query: 256 EACNQVEYQNQLMAVIKISESTILQQDKVKECYKHILE 293
+ N +I++ T + +D++ ECYK I E
Sbjct: 221 CPLQFPCFSN------RINQCTYVNKDELMECYKAIQE 252
>AT5G02110.1 | Symbols: CYCD7;1, CYCD7 | CYCD7;1 (CYCLIN D7;1);
cyclin-dependent protein kinase | chr5:417087-418553
FORWARD
Length = 341
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 5/169 (2%)
Query: 93 RKEAIDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLSLAAKV 152
R A W+++ ++ + T A N FDRF+ WM +L AV LS+A+K
Sbjct: 78 RFHAFQWLIQTRSRLNLSYETVFSAANCFDRFVYMTCCDEWTNWMVELVAVTSLSIASKF 137
Query: 153 EETQVPLLLDLQVEESKYVFEAKTMKRMELLVLSTLQWRMNPVTPISFFDHIIRRLGL-K 211
E PLL +L++E ++F T+ +MEL++L L+WR+N VT +F ++ ++G+
Sbjct: 138 NEVTTPLLEELEMEGLTHMFHVNTVAQMELIILKALEWRVNAVTSYTFSQTLVSKIGMVG 197
Query: 212 NHLHWEFLRRCERLLLSVIADSRFTSYLPSIFATAIMLHVIKEVEACNQ 260
+H+ + R LL VI D + Y PS+ ATA + ++ E + C +
Sbjct: 198 DHM---IMNRITNHLLDVICDLKMLQYPPSVVATAAIW-ILMEDKVCRE 242
>AT1G44110.1 | Symbols: CYCA1;1 | CYCA1;1 (Cyclin A1;1);
cyclin-dependent protein kinase regulator |
chr1:16775035-16777182 REVERSE
Length = 460
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 97 IDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLSLAAKVEETQ 156
+DW++ V Y T L VNY DR++S R K QL VAC+ +AAK EE
Sbjct: 232 VDWLIEVSEEYRLVPETLYLTVNYIDRYLSGNVISRQK---LQLLGVACMMIAAKYEEIC 288
Query: 157 VPLLLDLQVEESKYVFEAKTMK----RMELLVLSTLQWRMNPVTPISFFDHIIR 206
P QVEE Y+ + +K ME VL+ L++ M T F +R
Sbjct: 289 AP-----QVEEFCYITDNTYLKDEVLDMESDVLNYLKFEMTAPTTKCFLRRFVR 337
>AT1G77390.1 | Symbols: CYCA1;2, CYCA1 | CYCA1;2 (CYCLIN A1;2);
cyclin-dependent protein kinase regulator |
chr1:29081904-29084137 REVERSE
Length = 442
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 15/156 (9%)
Query: 97 IDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLSLAAKVEETQ 156
IDW++ V Y + T LAVNY DR+++ + QL V C+ +AAK EE
Sbjct: 216 IDWLVEVAEEYRLSPETLYLAVNYVDRYLTGNAINKQN---LQLLGVTCMMIAAKYEEVC 272
Query: 157 VPLLLDLQVEESKYVFEAKTMKR----MELLVLSTLQWRMNPVTPISFFDHIIRRLGLKN 212
VP QVE+ Y+ + ++ ME VL+ L++ + T F +R +
Sbjct: 273 VP-----QVEDFCYITDNTYLRNELLEMESSVLNYLKFELTTPTAKCFLRRFLRAAQGRK 327
Query: 213 HLHWEFLRRCERLLLSVIA--DSRFTSYLPSIFATA 246
+ L C L+ ++ D Y PS+ A +
Sbjct: 328 EVP-SLLSECLACYLTELSLLDYAMLRYAPSLVAAS 362
>AT1G20610.1 | Symbols: CYCB2;3 | CYCB2;3 (Cyclin B2;3);
cyclin-dependent protein kinase regulator |
chr1:7135073-7137273 REVERSE
Length = 429
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 97 IDWVLRVKAHYGFTAL--TSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLSLAAKVEE 154
IDW++ V HY F + T L +N DRF++ + R K QL V L LA K EE
Sbjct: 214 IDWLIEV--HYKFELMEETLYLTINVIDRFLAVHQIVRKKL---QLVGVTALLLACKYEE 268
Query: 155 TQVPLLLDLQVEESKYVFEAKTMKRMELLVLSTLQWRMNPVTPISFFDHIIR 206
VP++ DL + K + + + ME L+ +TLQ+ + TP F ++
Sbjct: 269 VSVPVVDDLILISDK-AYSRREVLDMEKLMANTLQFNFSLPTPYVFMKRFLK 319
>AT4G37490.1 | Symbols: CYC1, CYCB1;1, CYCB1 | CYCB1;1 (CYCLIN
B1;1); cyclin-dependent protein kinase regulator |
chr4:17622129-17624208 REVERSE
Length = 428
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 97 IDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLSLAAKVEETQ 156
++W++ V + T L VN DRF+S PR + QL ++ L ++AK EE
Sbjct: 201 VEWLIDVHVRFELNPETFYLTVNILDRFLSVKPVPRKE---LQLVGLSALLMSAKYEEIW 257
Query: 157 VPLLLDLQVEESKYVFEAKTMKRMELLVLSTLQWRMNPVTPISFFDHIIR 206
P + DL V+ + + + K + ME +LSTL+W + T F I+
Sbjct: 258 PPQVEDL-VDIADHAYSHKQILVMEKTILSTLEWYLTVPTHYVFLARFIK 306
>AT3G11520.1 | Symbols: CYCB1;3, CYC2 | CYCB1;3 (CYCLIN B1;3);
cyclin-dependent protein kinase regulator |
chr3:3625475-3627139 REVERSE
Length = 414
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 97 IDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLSLAAKVEETQ 156
IDW++ V + + T L VN DRF+S PR + QL V+ L +A+K EE
Sbjct: 195 IDWLVEVHVKFDLSPETLYLTVNIIDRFLSLKTVPRREL---QLVGVSALLIASKYEEIW 251
Query: 157 VPLLLDLQVEESKYVFEAKTMKRMELLVLSTLQWRMNPVTPISFFDHIIRRLG----LKN 212
P + DL V + + ++ + ME +L L+W + T F I+ G L+N
Sbjct: 252 PPQVNDL-VYVTDNSYNSRQILVMEKTILGNLEWYLTVPTQYVFLVRFIKASGSDQKLEN 310
Query: 213 HLHW 216
+H+
Sbjct: 311 LVHF 314
>AT5G25380.1 | Symbols: CYCA2;1 | CYCA2;1 (cyclin a2;1);
cyclin-dependent protein kinase regulator |
chr5:8815230-8817566 FORWARD
Length = 437
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 97 IDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLSLAAKVEETQ 156
IDW++ V Y + T L VN DRF+S + K QL + C+ +A+K EE
Sbjct: 211 IDWLVEVSEEYKLVSDTLYLTVNLIDRFMSHNYIEKQKL---QLLGITCMLIASKYEEIS 267
Query: 157 VPLLLDLQVEESKYVFEAKTMKRMELL-----VLSTLQWRMNPVTPISFFDHIIRRLGLK 211
P L EE ++ + T R+E+L VL++L +R++ T +F IR
Sbjct: 268 APRL-----EEFCFITD-NTYTRLEVLSMEIKVLNSLHFRLSVPTTKTFLRRFIRAAQAS 321
Query: 212 NH---LHWEFLRRCERLLLSVIADSRFTSYLPS-IFATAIML 249
+ + E+L L + + F +LPS I A+A+ L
Sbjct: 322 DKVPLIEMEYLANYFAEL--TLTEYTFLRFLPSLIAASAVFL 361
>AT5G11300.1 | Symbols: CYC3B, CYC2BAT, CYCA2;2 | CYC3B
(MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS);
cyclin-dependent protein kinase regulator |
chr5:3601811-3604466 REVERSE
Length = 436
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 93 RKEAIDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLSLAAKV 152
RK IDW++ V Y T L VN DRF+S R + QL V+C+ +A+K
Sbjct: 206 RKILIDWLVEVSDDYKLVPDTLYLTVNLIDRFLSNSYIERQR---LQLLGVSCMLIASKY 262
Query: 153 EETQVPLLLDLQVEESKYVFEAKTMKR-----MELLVLSTLQWRMNPVTPISFFDHIIRR 207
EE P VEE ++ A T R ME+ +L+ + +R++ T +F I+
Sbjct: 263 EELSAP-----GVEEFCFI-TANTYTRPEVLSMEIQILNFVHFRLSVPTTKTFLRRFIKA 316
Query: 208 LGLKNHLHWEFLRRCERLLLSV-IADSRFTSYLPS-IFATAIML 249
+ + L L + + + F +LPS I A+A+ L
Sbjct: 317 AQASYKVPFIELEYLANYLAELTLVEYSFLRFLPSLIAASAVFL 360
>AT1G47230.1 | Symbols: CYCA3;4 | cyclin, putative |
chr1:17306752-17308587 FORWARD
Length = 369
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 97 IDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLSLAAKVEETQ 156
+DW++ V Y + T L ++Y DRF+S R K QL V+ + +A+K EE
Sbjct: 135 VDWLVEVAEEYKLVSDTLYLTISYVDRFLSVKPINRQK---LQLVGVSAMLIASKYEEIG 191
Query: 157 VPLLLDLQVEESKYV----FEAKTMKRMELLVLSTLQWRMNPVTPISF---FDHIIRRLG 209
P +VE+ Y+ F + + ME +L LQ+ + T +F F + +
Sbjct: 192 PP-----KVEDFCYITDNTFTKQEVVSMEADILLALQFELGSPTIKTFLRRFTRVAQEDF 246
Query: 210 LKNHLHWEFLRRCERLLLSVIADSRFTSYLPSIF-ATAIML 249
+ L EFL C L + D YLPS+ A+A+ L
Sbjct: 247 KDSQLQIEFL--CCYLSELSMLDYTCVKYLPSLLSASAVFL 285
>AT5G43080.1 | Symbols: CYCA3;1 | CYCA3;1 (Cyclin A3;1);
cyclin-dependent protein kinase regulator |
chr5:17293227-17294789 FORWARD
Length = 355
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 97 IDWVLRVKAHYGFTALTSVLAVNYFDRFISTLKFPRDKPWMGQLAAVACLSLAAKVEETQ 156
+DW++ V Y + T LAV+Y DRF+S + + QL V + +A+K EE
Sbjct: 125 VDWLVEVAEEYKLLSDTLYLAVSYIDRFLSLKTVNKQR---LQLLGVTSMLIASKYEEIT 181
Query: 157 VPLLLDL-QVEESKYVFEAKTMKRMELLVLSTLQWRMNPVTPISF---FDHIIRRLGLKN 212
P + D + ++ Y + + +ME +L LQ+ + T +F F + + +
Sbjct: 182 PPNVDDFCYITDNTYT--KQEIVKMEADILLALQFELGNPTSNTFLRRFTRVAQEDFEMS 239
Query: 213 HLHWEFLRRCERLLLSVIADSRFTSYLPS-IFATAIML 249
HL EFL C L + D + +LPS + A+A+ L
Sbjct: 240 HLQMEFL--CSYLSELSMLDYQSVKFLPSTVAASAVFL 275