Jatropha Genome Database

JcCB0199171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0199171.10 + phase: 0 
         (159 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE ISOME...   237   3e-63
AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...   181   2e-46
AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...   180   3e-46

>AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE
           ISOMERASE); triose-phosphate isomerase |
           chr3:20553794-20556078 FORWARD
          Length = 254

 Score =  237 bits (604), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 111/133 (83%), Positives = 130/133 (97%)

Query: 19  SAEMLVNLNIPWVILGHSERRALLNESNEFVADKVAYALSQGLKVIACIGETLEQRESGS 78
           SAEMLVNL+IPWVILGHSERRA+LNES+EFV DKVAYAL+QGLKVIAC+GETLE+RE+GS
Sbjct: 80  SAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGS 139

Query: 79  TVAVVAAQTKAIADKISNWANVVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLSENVSA 138
           T+ VVAAQTKAIAD+++NW+NVV+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL++NVSA
Sbjct: 140 TMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSA 199

Query: 139 EVAASTRIIYGGN 151
           +VAA+TRIIYGG+
Sbjct: 200 DVAATTRIIYGGS 212


>AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 306

 Score =  181 bits (458), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 102/133 (76%)

Query: 19  SAEMLVNLNIPWVILGHSERRALLNESNEFVADKVAYALSQGLKVIACIGETLEQRESGS 78
           S E L +L   WVILGHSERR ++ E +EF+  K AYALS+GL VIACIGE LE+RE+G 
Sbjct: 130 SVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGK 189

Query: 79  TVAVVAAQTKAIADKISNWANVVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLSENVSA 138
           T  V  AQ KA AD + +W N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL +NVS 
Sbjct: 190 TFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSE 249

Query: 139 EVAASTRIIYGGN 151
           EVA+ TRIIYGG+
Sbjct: 250 EVASKTRIIYGGS 262


>AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 315

 Score =  180 bits (457), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 102/133 (76%)

Query: 19  SAEMLVNLNIPWVILGHSERRALLNESNEFVADKVAYALSQGLKVIACIGETLEQRESGS 78
           S E L +L   WVILGHSERR ++ E +EF+  K AYALS+GL VIACIGE LE+RE+G 
Sbjct: 139 SVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGK 198

Query: 79  TVAVVAAQTKAIADKISNWANVVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLSENVSA 138
           T  V  AQ KA AD + +W N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL +NVS 
Sbjct: 199 TFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSE 258

Query: 139 EVAASTRIIYGGN 151
           EVA+ TRIIYGG+
Sbjct: 259 EVASKTRIIYGGS 271