Jatropha Genome Database

JcCB0198891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198891.10 + phase: 0 
         (232 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40650.1 | Symbols: SDH2-2 | SDH2-2; electron carrier/ succin...   377   e-105
AT3G27380.2 | Symbols: SDH2-1 | SDH2-1; electron carrier/ succin...   367   e-102
AT3G27380.1 | Symbols: SDH2-1 | SDH2-1; electron carrier/ succin...   367   e-102
AT5G65165.1 | Symbols: SDH2-3 | SDH2-3; electron carrier/ succin...   260   5e-70

>AT5G40650.1 | Symbols: SDH2-2 | SDH2-2; electron carrier/ succinate
           dehydrogenase | chr5:16281462-16283296 FORWARD
          Length = 280

 Score =  377 bits (968), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/229 (79%), Positives = 196/229 (85%), Gaps = 3/229 (1%)

Query: 1   MATGLIRRGVSIARVSSSAPFTARFVPARFHASEAEAQKVEPKATSSTNLKTFQIYRWNP 60
           MA GLI R V     SS     AR +PAR+ ++ +EAQ          +LKTFQIYRWNP
Sbjct: 1   MAFGLIGRVVGTK--SSRLSTAARLIPARWTSTGSEAQSKASTGGGGASLKTFQIYRWNP 58

Query: 61  DNPAKPQLQDYQIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNG 120
           DNP KP+LQDY+IDLK+CGPMVLDALIKIKNE+DP+LTFRRSCREGICGSCAMNIDGCNG
Sbjct: 59  DNPGKPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNG 118

Query: 121 LACLTKIPSGN-SSTITPLPHMYVIKDLVVDMTNFYNQYKSIEPWLKRKNPPQVPGKEIL 179
           LACLTKI SG+  +TITPLPHM+VIKDLVVDMTNFYNQYKSIEPWLKRKNP  VPGKEIL
Sbjct: 119 LACLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEIL 178

Query: 180 QSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRYFS 228
           QSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANR+ S
Sbjct: 179 QSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIS 227


>AT3G27380.2 | Symbols: SDH2-1 | SDH2-1; electron carrier/ succinate
           dehydrogenase | chr3:10131209-10132673 REVERSE
          Length = 279

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/230 (77%), Positives = 194/230 (84%), Gaps = 4/230 (1%)

Query: 1   MATGLIRRGVSIARVSSSAPFTARFVPARFHASEAEAQ-KVEPKATSSTNLKTFQIYRWN 59
           MA+GLI R V      S     AR +PAR+ ++ AEA+ K        +NLKTFQIYRWN
Sbjct: 1   MASGLIGRLVGTK--PSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWN 58

Query: 60  PDNPAKPQLQDYQIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCN 119
           PDNP KP+LQ+YQIDLK+CGPMVLDALIKIKNE+DP+LTFRRSCREGICGSCAMNIDGCN
Sbjct: 59  PDNPGKPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCN 118

Query: 120 GLACLTKI-PSGNSSTITPLPHMYVIKDLVVDMTNFYNQYKSIEPWLKRKNPPQVPGKEI 178
           GLACLTKI    + +TITPLPHM+VIKDLVVDMTNFYNQYKSIEPWLKRK P  VP KEI
Sbjct: 119 GLACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEI 178

Query: 179 LQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRYFS 228
           LQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANR+ S
Sbjct: 179 LQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIS 228


>AT3G27380.1 | Symbols: SDH2-1 | SDH2-1; electron carrier/ succinate
           dehydrogenase | chr3:10131209-10132673 REVERSE
          Length = 279

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/230 (77%), Positives = 194/230 (84%), Gaps = 4/230 (1%)

Query: 1   MATGLIRRGVSIARVSSSAPFTARFVPARFHASEAEAQ-KVEPKATSSTNLKTFQIYRWN 59
           MA+GLI R V      S     AR +PAR+ ++ AEA+ K        +NLKTFQIYRWN
Sbjct: 1   MASGLIGRLVGTK--PSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWN 58

Query: 60  PDNPAKPQLQDYQIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCN 119
           PDNP KP+LQ+YQIDLK+CGPMVLDALIKIKNE+DP+LTFRRSCREGICGSCAMNIDGCN
Sbjct: 59  PDNPGKPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCN 118

Query: 120 GLACLTKI-PSGNSSTITPLPHMYVIKDLVVDMTNFYNQYKSIEPWLKRKNPPQVPGKEI 178
           GLACLTKI    + +TITPLPHM+VIKDLVVDMTNFYNQYKSIEPWLKRK P  VP KEI
Sbjct: 119 GLACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEI 178

Query: 179 LQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRYFS 228
           LQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANR+ S
Sbjct: 179 LQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIS 228


>AT5G65165.1 | Symbols: SDH2-3 | SDH2-3; electron carrier/ succinate
           dehydrogenase | chr5:26034515-26035922 REVERSE
          Length = 309

 Score =  260 bits (664), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 129/198 (65%), Positives = 148/198 (74%), Gaps = 11/198 (5%)

Query: 34  EAEAQKVEPKATSSTNLKTFQIYRWNPDNP-AKPQLQDYQIDLKECGPMVLDALIKIKNE 92
           E E Q  E K       K F+IYRWNPD P +KP LQ + +DL  CGPMVLD L KIK E
Sbjct: 57  EKEGQHKEVK-------KEFKIYRWNPDKPNSKPFLQSFFVDLSSCGPMVLDVLQKIKAE 109

Query: 93  IDPTLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSGNS--STITPLPHMYVIKDLVVD 150
            D +L++RRSCREGICGSC+MNIDG N +ACL  I    S  + ITPLPHMYVIKDLVVD
Sbjct: 110 DDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSKPTIITPLPHMYVIKDLVVD 169

Query: 151 MTNFYNQYKSIEPWLKRKNPPQVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWN 210
           +TNFY QYKS+EPWLK + PP+  G+E  QS KDR KLDG+YECILCACC+TSCPSYWWN
Sbjct: 170 LTNFYQQYKSMEPWLKTRKPPK-DGREHRQSPKDRKKLDGLYECILCACCTTSCPSYWWN 228

Query: 211 PESYLGPAALLHANRYFS 228
           PE + GPAALL A R+ S
Sbjct: 229 PEEFPGPAALLQAYRWIS 246