Jatropha Genome Database

JcCB0198751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198751.10 + phase: 1 /partial
         (578 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25050.1 | Symbols:  | formin homology 2 domain-containing pr...   360   2e-99
AT5G58160.1 | Symbols:  | actin binding | chr5:23533724-23539465...   337   1e-92
AT1G31810.1 | Symbols:  | actin binding | chr1:11399922-11405761...   328   4e-90

>AT2G25050.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr2:10654108-10659383 REVERSE
          Length = 1111

 Score =  360 bits (924), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 161/268 (60%), Positives = 199/268 (74%), Gaps = 1/268 (0%)

Query: 1   GDRRSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQNVLLMHC 60
           GD RS++  +L++YDMT+MDYPR YEGCP+L +E +HHFL+S+ESWL L  QQN+LL HC
Sbjct: 35  GDSRSRMESVLTEYDMTIMDYPRHYEGCPLLTMETVHHFLKSAESWLLL-SQQNILLSHC 93

Query: 61  ERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKEXXXXXXXXXXXXXXXRYLQYI 120
           E GGWP LAFMLA LLLYRKQ+SGE +TLEM+YKQAP+E               R+LQYI
Sbjct: 94  ELGGWPTLAFMLASLLLYRKQFSGEHRTLEMIYKQAPRELLQLMSPLNPLPSQLRFLQYI 153

Query: 121 SRRNFGSEWPPSDTPLVLDCLMLRALPIFGGGKGCRPVVRVYGQDARKPANRTSKLLFST 180
           SRRN GS+WPP D  L LDC+ LR +P F G  GCRP+ R+YGQD    ++RTSK+LFS 
Sbjct: 154 SRRNVGSQWPPLDQALTLDCVNLRLIPDFDGEGGCRPIFRIYGQDPFMASDRTSKVLFSM 213

Query: 181 SKAKKHLRHYSQDECLLVKIDIRCRIQGDVVLECIHLDEDLVHEEMIFRIMFHTAFVRAN 240
            K  K +R Y Q +C LVKIDI C I GDVVLECI L  DL  EEM+FR++F+TAF+R+N
Sbjct: 214 PKRSKAVRQYKQADCELVKIDINCHILGDVVLECITLGSDLEREEMMFRVVFNTAFLRSN 273

Query: 241 ILILCRDEIDILWDAKDQFPKEFKAEAV 268
           IL L R EID+LW+  D+FPK+F AE +
Sbjct: 274 ILTLNRGEIDVLWNTTDRFPKDFSAEVI 301


>AT5G58160.1 | Symbols:  | actin binding | chr5:23533724-23539465
           FORWARD
          Length = 1324

 Score =  337 bits (865), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 155/285 (54%), Positives = 207/285 (72%), Gaps = 12/285 (4%)

Query: 4   RSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERG 63
           RS ++D+LS++ +T+MDYPR YEGC +LP+E++HHFLRSSESWLSL G  N+LLMHCE G
Sbjct: 71  RSVMADVLSEHGLTIMDYPRHYEGCSLLPVEVMHHFLRSSESWLSL-GPNNLLLMHCESG 129

Query: 64  GWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKEXXXXXXXXXXXXXXXRYLQYISRR 123
            WPVLAFMLA LL+YRKQYSGE KTL+M+YKQAP+E               RYLQY+SRR
Sbjct: 130 AWPVLAFMLAALLIYRKQYSGESKTLDMIYKQAPRELLRLFSPLNPIPSQLRYLQYVSRR 189

Query: 124 NFGSEWPPSDTPLVLDCLMLRALPIFGGGKGCRPVVRVYGQDARKPANRTSKLLFSTSKA 183
           N  SEWPP D  L +DC++LR +P   G  G RP+ R+YGQD     ++  KLL++T K 
Sbjct: 190 NLVSEWPPLDRALTMDCVILRFIPDVSGQGGFRPMFRIYGQDPFFVDDKKPKLLYTTPKK 249

Query: 184 KKHLRHYSQDECLLVKIDIRCRIQGDVVLECIHLDEDLVHEEMIFRIMFHTAFVRANILI 243
            KHLR Y Q EC LVKIDI C +QGD+V+EC+ L++D+  E M+FR++F+TAF+R+NIL+
Sbjct: 250 GKHLRVYKQAECELVKIDINCHVQGDIVIECLSLNDDMEREVMMFRVVFNTAFIRSNILM 309

Query: 244 LCRDEIDILWDAKDQFPKEFKAE----------AVDMLSNNAIKE 278
           L RDE+D LW  K +FPK F+ E          +VD+++ ++++E
Sbjct: 310 LNRDEVDTLWHIK-EFPKGFRVELLFSDMDAASSVDLMNFSSLEE 353


>AT1G31810.1 | Symbols:  | actin binding | chr1:11399922-11405761
           REVERSE
          Length = 1230

 Score =  328 bits (842), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 138/268 (51%), Positives = 201/268 (75%)

Query: 1   GDRRSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQNVLLMHC 60
           G+++S  ++ L +YD+TV++YPRQYEGCPMLPL +I HFLR  ESWL+   +Q+V+L+HC
Sbjct: 68  GEKKSVFAETLCEYDVTVLEYPRQYEGCPMLPLSLIQHFLRVCESWLARGNRQDVILLHC 127

Query: 61  ERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKEXXXXXXXXXXXXXXXRYLQYI 120
           ERGGWP+LAF+LA  L++RK +SGE++TLE+V+++APK                RYLQY+
Sbjct: 128 ERGGWPLLAFILASFLIFRKVHSGERRTLEIVHREAPKGLLQLLSPLNPFPSQLRYLQYV 187

Query: 121 SRRNFGSEWPPSDTPLVLDCLMLRALPIFGGGKGCRPVVRVYGQDARKPANRTSKLLFST 180
           +RRN  SEWPP +  L LDC+++R +P F    GCRP++R++G++    +  ++++++S 
Sbjct: 188 ARRNINSEWPPPERALSLDCVIIRGIPNFDSQHGCRPIIRIFGRNYSSKSGLSTEMVYSM 247

Query: 181 SKAKKHLRHYSQDECLLVKIDIRCRIQGDVVLECIHLDEDLVHEEMIFRIMFHTAFVRAN 240
           S  KK LRHY Q EC ++KIDI+C +QGDVVLEC+H+D D   E M+FR+MF+TAF+R+N
Sbjct: 248 SDKKKPLRHYRQAECDVIKIDIQCWVQGDVVLECVHMDLDPEREVMMFRVMFNTAFIRSN 307

Query: 241 ILILCRDEIDILWDAKDQFPKEFKAEAV 268
           IL+L  D +DILW+AKD +PK F+AE +
Sbjct: 308 ILMLNSDNLDILWEAKDHYPKGFRAEVL 335