Jatropha Genome Database

JcCB0198061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198061.10 - phase: 0 
         (226 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11590.1 | Symbols:  | unknown protein | chr3:3660628-3663537...   155   2e-38
AT5G22310.1 | Symbols:  | unknown protein | chr5:7383742-7385345...    55   3e-08

>AT3G11590.1 | Symbols:  | unknown protein | chr3:3660628-3663537
           FORWARD
          Length = 622

 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/210 (47%), Positives = 120/210 (57%), Gaps = 11/210 (5%)

Query: 1   MPRQSRAAMEELLPGKIRKRGCXXXXXXXXXII-QNYRFKRAILVGKRGGSSTPVPTWKL 59
           MPRQ+++    LL GKIRKRGC         I+ + YRFKRAI+VGKRGGS+TPVPTW+L
Sbjct: 1   MPRQNQSVENLLLLGKIRKRGCSSPTSSTSSILREGYRFKRAIVVGKRGGSTTPVPTWRL 60

Query: 60  MGTARTP--SSALRAMDSPKYAASQNGGVIKGKLHQQQQAAPVSARKLAATLWEMNEMPS 117
           MG + +P  S AL A  SP    S + G   GK+      APVSARKLAATLWEMNEMPS
Sbjct: 61  MGRSPSPRASGALHAAASP----SSHCGSKTGKV---SAPAPVSARKLAATLWEMNEMPS 113

Query: 118 PK-MKEMVXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXERMERSGTGSRHR 176
           P+ ++E                      V                  ERMERSGTGSR R
Sbjct: 114 PRVVEEAAPMIRKSRKERIAPLPPPRSSVHSGSLPPHLSDPSHSPVSERMERSGTGSRQR 173

Query: 177 RALSISQRLRLTDHNVGAFDSVSNASLMEV 206
           RA S  Q+LRL D NVGA D +++ S M++
Sbjct: 174 RASSTVQKLRLGDCNVGARDPINSGSFMDI 203


>AT5G22310.1 | Symbols:  | unknown protein | chr5:7383742-7385345
           REVERSE
          Length = 481

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 54/108 (50%), Gaps = 22/108 (20%)

Query: 16  KIRKRGCXXXXXXXXXIIQNYRFKRAILVGKR-----GGSSTPVPTWKLMGTARTPSSAL 70
           KIRKRG          + +  RFKRAI  GKR     GGS TPV   K +  A+TP   L
Sbjct: 9   KIRKRG--GSSSSSSSLARRNRFKRAIFAGKRAAQDDGGSGTPV---KSITAAKTP--VL 61

Query: 71  RAMDSPKYAASQNGGVIKGKLHQQQQAAPVSARKLAATLWEMNEMPSP 118
            +  SP+              H Q Q + VSARKLAATLWE+N+   P
Sbjct: 62  LSF-SPENLPID---------HHQLQKSCVSARKLAATLWEINDDADP 99