Jatropha Genome Database
- JcCB0196521.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0196521.10 + phase: 0 /partial
(384 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS); transc... 343 8e-95
AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 149 3e-36
AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23... 149 3e-36
AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 149 3e-36
AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPON... 148 6e-36
AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 139 3e-33
AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 139 3e-33
AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTO... 119 3e-27
AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 100 1e-21
AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 100 1e-21
AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 100 1e-21
AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8); tr... 97 2e-20
AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); tr... 89 7e-18
AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 87 2e-17
AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 87 2e-17
AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 87 2e-17
AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 79 4e-15
AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 79 4e-15
AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 77 2e-14
AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 77 2e-14
AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 77 2e-14
AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);... 74 1e-13
AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);... 69 7e-12
AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);... 68 8e-12
AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);... 68 1e-11
AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);... 66 4e-11
AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);... 65 9e-11
AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);... 63 3e-10
AT5G25890.1 | Symbols: IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID... 60 2e-09
AT1G34170.3 | Symbols: | transcription factor | chr1:12443578-1... 59 7e-09
AT4G28640.1 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUC... 57 2e-08
AT4G28640.2 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUC... 56 3e-08
AT2G33310.2 | Symbols: IAA13 | IAA13; transcription factor | chr... 55 6e-08
AT2G33310.3 | Symbols: IAA13 | IAA13; transcription factor | chr... 55 6e-08
AT2G33310.1 | Symbols: IAA13 | IAA13; transcription factor | chr... 55 6e-08
AT1G04550.2 | Symbols: IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN... 55 7e-08
AT1G51950.1 | Symbols: IAA18 | IAA18 (INDOLE-3-ACETIC ACID INDUC... 54 1e-07
AT4G29080.1 | Symbols: PAP2, IAA27 | PAP2 (PHYTOCHROME-ASSOCIATE... 54 2e-07
AT3G16500.1 | Symbols: PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATE... 54 2e-07
AT4G14560.1 | Symbols: IAA1, AXR5 | IAA1 (INDOLE-3-ACETIC ACID I... 53 4e-07
AT1G15580.1 | Symbols: IAA5, ATAUX2-27, AUX2-27 | IAA5 (INDOLE-3... 52 8e-07
AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | ATAUX2-11 (AUXIN INDUCI... 51 1e-06
AT1G04240.1 | Symbols: SHY2, IAA3 | SHY2 (SHORT HYPOCOTYL 2); tr... 51 1e-06
AT3G62100.1 | Symbols: IAA30 | IAA30 (INDOLE-3-ACETIC ACID INDUC... 51 1e-06
AT2G46990.1 | Symbols: IAA20 | IAA20 (INDOLE-3-ACETIC ACID INDUC... 51 1e-06
AT3G17600.1 | Symbols: IAA31 | IAA31 (INDOLE-3-ACETIC ACID INDUC... 50 2e-06
AT3G23030.1 | Symbols: IAA2 | IAA2 (INDOLE-3-ACETIC ACID INDUCIB... 50 2e-06
>AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS);
transcription factor | chr1:6887353-6891182 FORWARD
Length = 902
Score = 343 bits (881), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 200/344 (58%), Positives = 239/344 (69%), Gaps = 43/344 (12%)
Query: 46 SQQINIPQADSNVLNGSLPFLDTDEWISNPSSCIPLPGIYGSSGPLSMFGLQEQSSILPE 105
+ QI PQ+D +NG FL+TDE S SS L G Y P + + +LP+
Sbjct: 592 THQIYQPQSDP--ING-FSFLETDELTSQVSSFQSLAGSYKQ--PFILSSQDSSAVVLPD 646
Query: 106 AINPSLPLMNQDLWDQQLNNLRFLSPPSQLVPLAQQDLCSLNSSGAKDLSDESNDQSGIY 165
+ N PL + D+WD QLN L+F Q PL QQDL Y
Sbjct: 647 STNS--PLFH-DVWDTQLNGLKF----DQFSPLMQQDL---------------------Y 678
Query: 166 GSLSVDVGNGGSA-VIDPSVSNTLLDELCTSKDADFQN-PSDCLVGN--LSSSQDVQSQI 221
S ++ + N ++ ++DP +SNT+LD+ C KD DFQN PS CLVGN S +QDVQSQI
Sbjct: 679 ASQNICMSNSTTSNILDPPLSNTVLDDFCAIKDTDFQNHPSGCLVGNNNTSFAQDVQSQI 738
Query: 222 TSASLADSQAFSQQDFPDSSGGT--SSSNVDIDKGNYMQNN---SWQQVA-PRVRTYTKV 275
TSAS ADSQAFS+QDFPD+SGGT SSSNVD D + QN+ SWQ++A PRVRTYTKV
Sbjct: 739 TSASFADSQAFSRQDFPDNSGGTGTSSSNVDFDDCSLRQNSKGSSWQKIATPRVRTYTKV 798
Query: 276 QKAGSVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYENDVLLIGDD 335
QK GSVGRSIDV+SF++YEEL SAIECMFGLEGLL +P+ SGWKLVYVDYE+DVLL+GDD
Sbjct: 799 QKTGSVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESDVLLVGDD 858
Query: 336 PWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNNANINGLNTSVT 379
PWEEFVGCVRCIRILSP+EVQQMSEEGMKLLN+A IN L TSV+
Sbjct: 859 PWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSAGINDLKTSVS 902
>AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription
activator/ transcription factor/ transcription regulator
| chr5:7016704-7021504 REVERSE
Length = 1165
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 119/189 (62%), Gaps = 12/189 (6%)
Query: 175 GGSAVIDPSVSNTLLDELCTSKDADFQNPSDCLVGNLSS-SQDVQSQITSASLADSQAFS 233
GG+ V + V +TLL S+ D QN ++ N + D+ +++ S S +Q+F
Sbjct: 953 GGANVDNGFVPDTLLSRGYDSQK-DLQN----MLSNYGGVTNDIGTEM-STSAVRTQSFG 1006
Query: 234 QQDFPDSSGGTSSSNVDIDKGNYMQNNSWQQVAPRVRTYTKVQKAGSVGRSIDVSSFRNY 293
+ P S+++ ++ + W R+RTYTKVQK GSVGRSIDV+ +R Y
Sbjct: 1007 VPNVP-----AISNDLAVNDAGVLGGGLWPAQTQRMRTYTKVQKRGSVGRSIDVNRYRGY 1061
Query: 294 EELCSAIECMFGLEGLLNNPRESGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPS 353
+EL + MFG+EG L +P+ S WKLVYVD+END+LL+GDDPWEEFV CV+ I+ILS +
Sbjct: 1062 DELRHDLARMFGIEGQLEDPQTSDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSA 1121
Query: 354 EVQQMSEEG 362
EVQQMS +G
Sbjct: 1122 EVQQMSLDG 1130
>AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23,
IAA25 | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1150
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 119/189 (62%), Gaps = 12/189 (6%)
Query: 175 GGSAVIDPSVSNTLLDELCTSKDADFQNPSDCLVGNLSS-SQDVQSQITSASLADSQAFS 233
GG+ V + V +TLL S+ D QN ++ N + D+ +++ S S +Q+F
Sbjct: 953 GGANVDNGFVPDTLLSRGYDSQK-DLQN----MLSNYGGVTNDIGTEM-STSAVRTQSFG 1006
Query: 234 QQDFPDSSGGTSSSNVDIDKGNYMQNNSWQQVAPRVRTYTKVQKAGSVGRSIDVSSFRNY 293
+ P S+++ ++ + W R+RTYTKVQK GSVGRSIDV+ +R Y
Sbjct: 1007 VPNVP-----AISNDLAVNDAGVLGGGLWPAQTQRMRTYTKVQKRGSVGRSIDVNRYRGY 1061
Query: 294 EELCSAIECMFGLEGLLNNPRESGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPS 353
+EL + MFG+EG L +P+ S WKLVYVD+END+LL+GDDPWEEFV CV+ I+ILS +
Sbjct: 1062 DELRHDLARMFGIEGQLEDPQTSDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSA 1121
Query: 354 EVQQMSEEG 362
EVQQMS +G
Sbjct: 1122 EVQQMSLDG 1130
>AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription
activator/ transcription factor/ transcription regulator
| chr5:7016704-7021504 REVERSE
Length = 1164
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 119/189 (62%), Gaps = 12/189 (6%)
Query: 175 GGSAVIDPSVSNTLLDELCTSKDADFQNPSDCLVGNLSS-SQDVQSQITSASLADSQAFS 233
GG+ V + V +TLL S+ D QN ++ N + D+ +++ S S +Q+F
Sbjct: 952 GGANVDNGFVPDTLLSRGYDSQK-DLQN----MLSNYGGVTNDIGTEM-STSAVRTQSFG 1005
Query: 234 QQDFPDSSGGTSSSNVDIDKGNYMQNNSWQQVAPRVRTYTKVQKAGSVGRSIDVSSFRNY 293
+ P S+++ ++ + W R+RTYTKVQK GSVGRSIDV+ +R Y
Sbjct: 1006 VPNVP-----AISNDLAVNDAGVLGGGLWPAQTQRMRTYTKVQKRGSVGRSIDVNRYRGY 1060
Query: 294 EELCSAIECMFGLEGLLNNPRESGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPS 353
+EL + MFG+EG L +P+ S WKLVYVD+END+LL+GDDPWEEFV CV+ I+ILS +
Sbjct: 1061 DELRHDLARMFGIEGQLEDPQTSDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSA 1120
Query: 354 EVQQMSEEG 362
EVQQMS +G
Sbjct: 1121 EVQQMSLDG 1129
>AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE
FACTOR 19); DNA binding / transcription factor |
chr1:6628395-6632779 REVERSE
Length = 1086
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 112/174 (64%), Gaps = 8/174 (4%)
Query: 190 DELCTSKDADFQNPSDCLVGNLSSS-QDVQSQITSASLADSQAFSQQDFPDSSGGTSSSN 248
D L + KD FQN LV N ++ +D++++++SA+++ SQ+F P G ++
Sbjct: 884 DPLYSQKD--FQN----LVPNYGNTPRDIETELSSAAIS-SQSFGIPSIPFKPGCSNEVG 936
Query: 249 VDIDKGNYMQNNSWQQVAPRVRTYTKVQKAGSVGRSIDVSSFRNYEELCSAIECMFGLEG 308
D G W R+RTYTKVQK GSVGRSIDV+ + Y+EL + MFG+EG
Sbjct: 937 GINDSGIMNGGGLWPNQTQRMRTYTKVQKRGSVGRSIDVTRYSGYDELRHDLARMFGIEG 996
Query: 309 LLNNPRESGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEG 362
L +P S WKLVY D+END+LL+GDDPWEEFV CV+ I+ILS EVQQMS +G
Sbjct: 997 QLEDPLTSDWKLVYTDHENDILLVGDDPWEEFVNCVQNIKILSSVEVQQMSLDG 1050
>AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 933
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 79/103 (76%)
Query: 267 PRVRTYTKVQKAGSVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYE 326
P+ T+ KV K+GS GRS+D+S F +Y EL S + MFGLEG L +P SGW+LV+VD E
Sbjct: 791 PQSNTFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRE 850
Query: 327 NDVLLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNNA 369
NDVLL+GDDPW EFV V CI+ILSP EVQQM + G++LLN+A
Sbjct: 851 NDVLLLGDDPWPEFVSSVWCIKILSPQEVQQMGKRGLELLNSA 893
>AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 935
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 79/103 (76%)
Query: 267 PRVRTYTKVQKAGSVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYE 326
P+ T+ KV K+GS GRS+D+S F +Y EL S + MFGLEG L +P SGW+LV+VD E
Sbjct: 793 PQSNTFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRE 852
Query: 327 NDVLLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNNA 369
NDVLL+GDDPW EFV V CI+ILSP EVQQM + G++LLN+A
Sbjct: 853 NDVLLLGDDPWPEFVSSVWCIKILSPQEVQQMGKRGLELLNSA 895
>AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTOR
8); transcription factor | chr5:14630151-14634106
FORWARD
Length = 811
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 69/95 (72%)
Query: 268 RVRTYTKVQKAGSVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEN 327
+ + + KV K+GSVGRS+D+S F +Y EL + MF +EGLL +P SGW+LV+VD EN
Sbjct: 703 QTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKEN 762
Query: 328 DVLLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEG 362
D+LL+GDDPWE FV V I+ILSP +V QM + G
Sbjct: 763 DILLLGDDPWESFVNNVWYIKILSPEDVHQMGDHG 797
>AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 101/184 (54%), Gaps = 15/184 (8%)
Query: 187 TLLDELCTSKDADFQNPSDCLVGNLSSSQDVQSQITSASLADSQAFSQ------QDFPDS 240
T+ +E S++ + + L N++ + SQ + L D+ +Q QD D
Sbjct: 641 TIQEETAKSREGNCRLFGIPLTNNMNGTDSTMSQRNN--LNDAAGLTQIASPKVQDLSDQ 698
Query: 241 SGGTSSSNVDIDKGNYMQNNS-----WQQVAPRVRTYTKVQKAG-SVGRSIDVSSFRNYE 294
S G+ S+N ++G Q N+ Q R+ TKV K G ++GRS+D+S F+NYE
Sbjct: 699 SKGSKSTNDHREQGRPFQTNNPHPKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKFQNYE 758
Query: 295 ELCSAIECMFGLEGLLNNPRESGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPSE 354
EL + ++ +F G L P++ W +VY D END++L+GDDPW+EF VR I I + E
Sbjct: 759 ELVAELDRLFEFNGELMAPKKD-WLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEE 817
Query: 355 VQQM 358
V++M
Sbjct: 818 VRKM 821
>AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 101/184 (54%), Gaps = 15/184 (8%)
Query: 187 TLLDELCTSKDADFQNPSDCLVGNLSSSQDVQSQITSASLADSQAFSQ------QDFPDS 240
T+ +E S++ + + L N++ + SQ + L D+ +Q QD D
Sbjct: 641 TIQEETAKSREGNCRLFGIPLTNNMNGTDSTMSQRNN--LNDAAGLTQIASPKVQDLSDQ 698
Query: 241 SGGTSSSNVDIDKGNYMQNNS-----WQQVAPRVRTYTKVQKAG-SVGRSIDVSSFRNYE 294
S G+ S+N ++G Q N+ Q R+ TKV K G ++GRS+D+S F+NYE
Sbjct: 699 SKGSKSTNDHREQGRPFQTNNPHPKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKFQNYE 758
Query: 295 ELCSAIECMFGLEGLLNNPRESGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPSE 354
EL + ++ +F G L P++ W +VY D END++L+GDDPW+EF VR I I + E
Sbjct: 759 ELVAELDRLFEFNGELMAPKKD-WLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEE 817
Query: 355 VQQM 358
V++M
Sbjct: 818 VRKM 821
>AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 101/184 (54%), Gaps = 15/184 (8%)
Query: 187 TLLDELCTSKDADFQNPSDCLVGNLSSSQDVQSQITSASLADSQAFSQ------QDFPDS 240
T+ +E S++ + + L N++ + SQ + L D+ +Q QD D
Sbjct: 641 TIQEETAKSREGNCRLFGIPLTNNMNGTDSTMSQRNN--LNDAAGLTQIASPKVQDLSDQ 698
Query: 241 SGGTSSSNVDIDKGNYMQNNS-----WQQVAPRVRTYTKVQKAG-SVGRSIDVSSFRNYE 294
S G+ S+N ++G Q N+ Q R+ TKV K G ++GRS+D+S F+NYE
Sbjct: 699 SKGSKSTNDHREQGRPFQTNNPHPKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKFQNYE 758
Query: 295 ELCSAIECMFGLEGLLNNPRESGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPSE 354
EL + ++ +F G L P++ W +VY D END++L+GDDPW+EF VR I I + E
Sbjct: 759 ELVAELDRLFEFNGELMAPKKD-WLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEE 817
Query: 355 VQQM 358
V++M
Sbjct: 818 VRKM 821
>AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8);
transcription factor | chr5:14630151-14633916 FORWARD
Length = 773
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 54/71 (76%)
Query: 268 RVRTYTKVQKAGSVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEN 327
+ + + KV K+GSVGRS+D+S F +Y EL + MF +EGLL +P SGW+LV+VD EN
Sbjct: 703 QTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKEN 762
Query: 328 DVLLIGDDPWE 338
D+LL+GDDPWE
Sbjct: 763 DILLLGDDPWE 773
>AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4);
transcription factor | chr5:24308558-24312187 REVERSE
Length = 788
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 2/103 (1%)
Query: 270 RTYTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEND 328
R TKV K GS VGR+ID+S Y++L +E +F +EGLL +P E GW+++Y D END
Sbjct: 665 RICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDP-EKGWRILYTDSEND 723
Query: 329 VLLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNNANI 371
++++GDDPW +F V I + + EV+ +++ L A +
Sbjct: 724 MMVVGDDPWHDFCNVVWKIHLYTKEEVENANDDNKSCLEQAAL 766
>AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 72/106 (67%), Gaps = 5/106 (4%)
Query: 268 RVRTYTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEG-LLNNPRESGWKLVYVDY 325
++R+ TKV GS VGR+ID++ YE+L +E MF ++G LL + ++ W++VY D
Sbjct: 540 QIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKK--WQVVYTDD 597
Query: 326 ENDVLLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNNANI 371
E+D++++GDDPW EF G VR I I +P EV+++S + KL NA +
Sbjct: 598 EDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKN-KLAVNARM 642
>AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 72/106 (67%), Gaps = 5/106 (4%)
Query: 268 RVRTYTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEG-LLNNPRESGWKLVYVDY 325
++R+ TKV GS VGR+ID++ YE+L +E MF ++G LL + ++ W++VY D
Sbjct: 540 QIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKK--WQVVYTDD 597
Query: 326 ENDVLLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNNANI 371
E+D++++GDDPW EF G VR I I +P EV+++S + KL NA +
Sbjct: 598 EDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKN-KLAVNARM 642
>AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 662
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 72/106 (67%), Gaps = 5/106 (4%)
Query: 268 RVRTYTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEG-LLNNPRESGWKLVYVDY 325
++R+ TKV GS VGR+ID++ YE+L +E MF ++G LL + ++ W++VY D
Sbjct: 537 QIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKK--WQVVYTDD 594
Query: 326 ENDVLLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNNANI 371
E+D++++GDDPW EF G VR I I +P EV+++S + KL NA +
Sbjct: 595 EDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKN-KLAVNARM 639
>AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 636
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 270 RTYTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEND 328
R+ TKVQ G VGR++D+++ + Y EL IE +F ++G L + + W++V+ D E D
Sbjct: 521 RSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRS--RNQWEIVFTDDEGD 578
Query: 329 VLLIGDDPWEEFVGCVRCIRILSPSEVQQMS 359
++L+GDDPW EF V+ I I S EV++M+
Sbjct: 579 MMLVGDDPWPEFCNMVKRIFIWSKEEVKKMT 609
>AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 638
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 270 RTYTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEND 328
R+ TKVQ G VGR++D+++ + Y EL IE +F ++G L + + W++V+ D E D
Sbjct: 523 RSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRS--RNQWEIVFTDDEGD 580
Query: 329 VLLIGDDPWEEFVGCVRCIRILSPSEVQQMS 359
++L+GDDPW EF V+ I I S EV++M+
Sbjct: 581 MMLVGDDPWPEFCNMVKRIFIWSKEEVKKMT 611
>AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105511-19108029 FORWARD
Length = 514
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
Query: 269 VRTYTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEN 327
R+ KVQ G+ VGR++D++ R+Y+EL +E MF +EG L+ P++ W +V+ D E
Sbjct: 402 TRSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELS-PKDK-WAIVFTDDEG 459
Query: 328 DVLLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEGM 363
D +L+GDDPW EF + + I EV++M + +
Sbjct: 460 DRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKSL 495
>AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19104993-19108029 FORWARD
Length = 601
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 270 RTYTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEND 328
R+ KVQ G+ VGR++D++ R+Y+EL +E MF +EG L+ P++ W +V+ D E D
Sbjct: 490 RSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELS-PKDK-WAIVFTDDEGD 547
Query: 329 VLLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEGM 363
+L+GDDPW EF + + I EV++M + +
Sbjct: 548 RMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKSL 582
>AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105112-19108029 FORWARD
Length = 622
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 270 RTYTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEND 328
R+ KVQ G+ VGR++D++ R+Y+EL +E MF +EG L+ P++ W +V+ D E D
Sbjct: 511 RSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELS-PKDK-WAIVFTDDEGD 568
Query: 329 VLLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEGM 363
+L+GDDPW EF + + I EV++M + +
Sbjct: 569 RMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKSL 603
>AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);
transcription factor | chr3:22888171-22891179 FORWARD
Length = 602
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 270 RTYTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEND 328
R+ TKVQ G +VGR++D++ ++Y+EL +E MF ++G L W +V+ D E D
Sbjct: 489 RSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLLA--RDKWIVVFTDDEGD 546
Query: 329 VLLIGDDPWEEFVGCVRCIRILSPSEVQQMS 359
++L GDDPW EF + I I S EV++M+
Sbjct: 547 MMLAGDDPWNEFCKMAKKIFIYSSDEVKKMT 577
>AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);
transcription factor | chr1:12927457-12930523 REVERSE
Length = 590
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 270 RTYTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEND 328
RT TKVQ G ++GR++D+S Y++L +E +F L+G L + WK+ + D +
Sbjct: 495 RTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQT--RNQWKIAFTDSDGY 552
Query: 329 VLLIGDDPWEEFVGCVRCIRILSPSEVQ 356
+L+GDDPW EF V+ I I S EV+
Sbjct: 553 EMLVGDDPWPEFCKMVKKILIYSKEEVK 580
>AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);
transcription factor | chr1:13108634-13111700 FORWARD
Length = 605
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 270 RTYTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEND 328
RT TKVQ G ++GR++D+S Y++L +E +F L+G L + W++ + + E D
Sbjct: 510 RTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQA--RNQWEIAFTNNEED 567
Query: 329 VLLIGDDPWEEFVGCVRCIRILSPSEVQQMS 359
+L+G+DPW EF V+ I I S EV+ +
Sbjct: 568 KMLVGEDPWPEFCNMVKKIFIYSKEEVKNLK 598
>AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);
transcription factor | chr1:12577722-12580824 FORWARD
Length = 606
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 270 RTYTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEND 328
RT TKVQ G ++GR++D+S Y++L +E +F ++G L + WK+ + D +
Sbjct: 511 RTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQLQT--RNQWKIAFTDSDGY 568
Query: 329 VLLIGDDPWEEFVGCVRCIRILSPSEVQ 356
+L+GDDPW EF V+ I I S EV+
Sbjct: 569 EMLVGDDPWPEFCKMVKKILIYSKEEVK 596
>AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);
transcription factor | chr1:13082819-13085830 REVERSE
Length = 598
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 270 RTYTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEND 328
RT TKVQ G ++GR++D+S Y++L +E +F L+G L + WK+++ + D
Sbjct: 516 RTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQT--RNQWKIIFTGSDED 573
Query: 329 VLLIGDDPWEEFVGCVRCIRI 349
+L+GDDPW EF V+ I I
Sbjct: 574 EMLVGDDPWPEFCNMVKRIYI 594
>AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);
transcription factor | chr1:12508548-12511520 REVERSE
Length = 593
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 270 RTYTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEND 328
RT TKVQ G ++GR++D+S Y++L +E +F ++G L + W++ + D + D
Sbjct: 511 RTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQLQT--RNQWEIAFTDSDED 568
Query: 329 VLLIGDDPWEEFVGCVRCIRI 349
+L+GDDPW EF V+ I I
Sbjct: 569 KMLVGDDPWPEFCNMVKKIFI 589
>AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);
transcription factor | chr1:12556005-12559082 FORWARD
Length = 598
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 270 RTYTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYEND 328
RT TKVQ G ++ R++D+S Y++L +E +F L+G L + W++ + D ++D
Sbjct: 509 RTCTKVQMQGVTIERAVDLSVLNGYDQLILELEELFDLKGQLQT--RNQWEIAFTDSDDD 566
Query: 329 VLLIGDDPWEEFVGCVRCIRILS 351
+L+GDDPW EF V+ I I
Sbjct: 567 KMLVGDDPWPEFCNMVKKILIFK 589
>AT5G25890.1 | Symbols: IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID
INDUCIBLE 28); transcription factor |
chr5:9033480-9034554 FORWARD
Length = 175
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 272 YTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYENDVL 330
Y K+ G +GR +++S++ NY++L A++ +F + + R+ + LVY D E D +
Sbjct: 82 YVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFSKKDSWDLNRQ--YTLVYEDTEGDKV 139
Query: 331 LIGDDPWEEFVGCVRCIRILSPSEVQQMS 359
L+GD PWE FV V+ + +L S +S
Sbjct: 140 LVGDVPWEMFVSTVKRLHVLKTSHAFSLS 168
>AT1G34170.3 | Symbols: | transcription factor |
chr1:12443578-12446764 REVERSE
Length = 546
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 273 TKVQKAG-SVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYENDVLL 331
TKV G ++ R++D+++ Y +L +E +F L+ L + W++V+ + E +L
Sbjct: 436 TKVHMQGVAISRAVDLTAMHGYNQLIQKLEELFDLKDELRT--RNQWEIVFTNNEGAEML 493
Query: 332 IGDDPWEEFVGCVRCIRILSPSEVQQMS 359
+GDDPW EF + I I S E+++M
Sbjct: 494 VGDDPWPEFCNMAKRIFICSKEEIKKMK 521
>AT4G28640.1 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID
INDUCIBLE 11); transcription factor |
chr4:14142288-14143755 FORWARD
Length = 246
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 17/100 (17%)
Query: 272 YTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMF----------GLEGLLNNPRE----- 315
+ KV G +GR ID+++ + YE L + +E MF +G + P +
Sbjct: 138 FVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDG 197
Query: 316 -SGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPSE 354
SG L Y D E D +L+GD PW F+G VR +RI+ SE
Sbjct: 198 SSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSE 237
>AT4G28640.2 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID
INDUCIBLE 11); transcription factor |
chr4:14142288-14143928 FORWARD
Length = 302
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 17/100 (17%)
Query: 272 YTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMF----------GLEGLLNNPRE----- 315
+ KV G +GR ID+++ + YE L + +E MF +G + P +
Sbjct: 138 FVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDG 197
Query: 316 -SGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPSE 354
SG L Y D E D +L+GD PW F+G VR +RI+ SE
Sbjct: 198 SSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSE 237
>AT2G33310.2 | Symbols: IAA13 | IAA13; transcription factor |
chr2:14114569-14115757 REVERSE
Length = 247
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 272 YTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMF--------GLEGLLNNPRE-----SG 317
+ KV G ++GR +D+++ +YE L +E MF GL P S
Sbjct: 131 FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSE 190
Query: 318 WKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPSEVQQMS 359
+ L Y D E D +L+GD PW F+ V+ +R++ SE ++
Sbjct: 191 FVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLA 232
>AT2G33310.3 | Symbols: IAA13 | IAA13; transcription factor |
chr2:14114569-14115757 REVERSE
Length = 246
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 272 YTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMF--------GLEGLLNNPRE-----SG 317
+ KV G ++GR +D+++ +YE L +E MF GL P S
Sbjct: 130 FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSE 189
Query: 318 WKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPSE 354
+ L Y D E D +L+GD PW F+ V+ +R++ SE
Sbjct: 190 FVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSE 226
>AT2G33310.1 | Symbols: IAA13 | IAA13; transcription factor |
chr2:14114569-14115757 REVERSE
Length = 246
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 272 YTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMF--------GLEGLLNNPRE-----SG 317
+ KV G ++GR +D+++ +YE L +E MF GL P S
Sbjct: 130 FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSE 189
Query: 318 WKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPSE 354
+ L Y D E D +L+GD PW F+ V+ +R++ SE
Sbjct: 190 FVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSE 226
>AT1G04550.2 | Symbols: IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN
12); transcription factor/ transcription repressor |
chr1:1240582-1241810 FORWARD
Length = 239
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 264 QVAPRVRT--YTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMF-GLEGLLNNPR----- 314
+V P+V+ + KV G +GR +D+ + +YE L +E MF G+ G +
Sbjct: 116 KVNPKVQGLGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLR 175
Query: 315 ----ESGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPSEVQQMS 359
S + L Y D E D +L+GD PW F+ V+ +RI+ SE ++
Sbjct: 176 LLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLA 224
>AT1G51950.1 | Symbols: IAA18 | IAA18 (INDOLE-3-ACETIC ACID
INDUCIBLE 18); transcription factor |
chr1:19305670-19307130 FORWARD
Length = 267
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 20/93 (21%)
Query: 281 VGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRE------------------SGWKLVY 322
+GR +D+S+ +YE+L ++ +F GLL R+ + L Y
Sbjct: 161 IGRKVDLSAHNSYEQLSFTVDKLF--RGLLAAQRDFPSSIEDEKPITGLLDGNGEYTLTY 218
Query: 323 VDYENDVLLIGDDPWEEFVGCVRCIRILSPSEV 355
D E D +L+GD PW+ FV V+ +R++ SE+
Sbjct: 219 EDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSEI 251
>AT4G29080.1 | Symbols: PAP2, IAA27 | PAP2 (PHYTOCHROME-ASSOCIATED
PROTEIN 2); transcription factor |
chr4:14323665-14325213 REVERSE
Length = 305
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 20/119 (16%)
Query: 272 YTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMF--------------GLEGLLNNP--- 313
Y KV G+ R ID+ ++++Y EL SA+E MF G +GL +
Sbjct: 187 YVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTD 246
Query: 314 --RESGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNNAN 370
R S + + Y D ++D +L+GD PWE F+ + +RI+ SE ++ M+ + N
Sbjct: 247 LLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305
>AT3G16500.1 | Symbols: PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATED
PROTEIN 1); transcription factor | chr3:5612801-5614208
REVERSE
Length = 269
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 20/93 (21%)
Query: 281 VGRSIDVSSFRNYEELCSAIECMF--------------GLE----GLLNNPRESGWKLVY 322
+GR +D++++ +YE+L ++ +F G E GLL+ E + L Y
Sbjct: 163 IGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDGQGEEKPIIGLLDGKGE--FTLTY 220
Query: 323 VDYENDVLLIGDDPWEEFVGCVRCIRILSPSEV 355
D E D +L+GD PW+ FV V+ +R++ SE+
Sbjct: 221 EDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSEI 253
>AT4G14560.1 | Symbols: IAA1, AXR5 | IAA1 (INDOLE-3-ACETIC ACID
INDUCIBLE); protein binding / transcription factor |
chr4:8361182-8361780 FORWARD
Length = 168
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 272 YTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRE----SGWKLVYVDYE 326
Y KV G+ R ID+ ++NY EL A+E MF + RE SG+ Y D +
Sbjct: 76 YVKVSMDGAPYLRKIDLKMYKNYPELLKALENMFKFTVGEYSEREGYKGSGFVPTYEDKD 135
Query: 327 NDVLLIGDDPWEEFVGCVRCIRILSPSEV 355
D +L+GD PW+ F + +RI+ SE
Sbjct: 136 GDWMLVGDVPWDMFSSSCQKLRIMKGSEA 164
>AT1G15580.1 | Symbols: IAA5, ATAUX2-27, AUX2-27 | IAA5
(INDOLE-3-ACETIC ACID INDUCIBLE 5); transcription factor
| chr1:5365764-5366460 REVERSE
Length = 163
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 255 NYMQNNSWQQVAPRVRTYTKVQKAGSVG-RSIDVSSFRNYEELCSAIECMFGLEGLLNNP 313
+Y + NS ++ +Y KV G+ R ID+ ++ Y++L SA++ +FG ++
Sbjct: 62 SYRRKNSLERTKS---SYVKVSVDGAAFLRKIDLEMYKCYQDLASALQILFGCYINFDDT 118
Query: 314 -RESGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILSPS 353
+ES +Y D + D +L GD PWE F+G + +RI+ S
Sbjct: 119 LKESECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMKRS 159
>AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | ATAUX2-11 (AUXIN INDUCIBLE
2-11); DNA binding / transcription factor |
chr5:17550465-17551206 FORWARD
Length = 186
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 272 YTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWK-----LVYVDY 325
Y KV G+ R ID++ ++ Y EL ++E MF RE G+K Y D
Sbjct: 90 YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFKFSVGEYFERE-GYKGSDFVPTYEDK 148
Query: 326 ENDVLLIGDDPWEEFVGCVRCIRILSPSEVQQM 358
+ D +L+GD PWE FV + +RI+ SEV+ +
Sbjct: 149 DGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181
>AT1G04240.1 | Symbols: SHY2, IAA3 | SHY2 (SHORT HYPOCOTYL 2);
transcription factor | chr1:1128564-1129319 REVERSE
Length = 189
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 272 YTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMF----GLEGLLNNPRESGWKLVYVDYE 326
Y KV G+ R ID+S ++ Y EL A+E MF G + + S + Y D +
Sbjct: 94 YVKVSMDGAPYLRKIDLSCYKGYSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKD 153
Query: 327 NDVLLIGDDPWEEFVGCVRCIRILSPSEVQQM 358
D +LIGD PWE F+ + +RI+ SE + +
Sbjct: 154 GDWMLIGDVPWEMFICTCKRLRIMKGSEAKGL 185
>AT3G62100.1 | Symbols: IAA30 | IAA30 (INDOLE-3-ACETIC ACID
INDUCIBLE 30); transcription factor |
chr3:22995835-22996593 FORWARD
Length = 172
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 272 YTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPR----ESGWKLVYVDYE 326
Y KV G +GR ID+ S Y +L + ++ MF L E L Y D E
Sbjct: 84 YVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEEDMCSEKSHVLTYADKE 143
Query: 327 NDVLLIGDDPWEEFVGCVRCIRI 349
D +++GD PWE F+ VR ++I
Sbjct: 144 GDWMMVGDVPWEMFLSSVRRLKI 166
>AT2G46990.1 | Symbols: IAA20 | IAA20 (INDOLE-3-ACETIC ACID
INDUCIBLE 20); transcription factor |
chr2:19307861-19308869 FORWARD
Length = 175
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 272 YTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPR----ESGWKLVYVDYE 326
Y KV G +GR ID+ S Y +L ++ MF L E L Y D E
Sbjct: 86 YVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEEDMCNEKSHVLTYADKE 145
Query: 327 NDVLLIGDDPWEEFVGCVRCIRI 349
D +++GD PWE F+ VR ++I
Sbjct: 146 GDWMMVGDVPWEMFLSTVRRLKI 168
>AT3G17600.1 | Symbols: IAA31 | IAA31 (INDOLE-3-ACETIC ACID
INDUCIBLE 31); transcription factor |
chr3:6020281-6021040 REVERSE
Length = 158
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 272 YTKVQKAG-SVGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRESGWKLVYVDYENDVL 330
+ KV G +GR +D+ F YE L + MF + N L Y D + D +
Sbjct: 74 FVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGNRDRKHHVLTYEDKDGDWM 133
Query: 331 LIGDDPWEEFVGCVRCIRILSPSE 354
++GD PW+ F+ VR ++I P
Sbjct: 134 MVGDIPWDMFLETVRRLKITRPER 157
>AT3G23030.1 | Symbols: IAA2 | IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE
2); transcription factor | chr3:8181069-8181685 REVERSE
Length = 174
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 271 TYTKVQKAGS-VGRSIDVSSFRNYEELCSAIECMFGLEGLLNNPRE----SGWKLVYVDY 325
+Y KV G+ R ID+ +++NY EL A+E MF + RE SG+ Y D
Sbjct: 78 SYVKVSMDGAPYLRKIDLKTYKNYPELLKALENMFKVMIGEYCEREGYKGSGFVPTYEDK 137
Query: 326 ENDVLLIGDDPWEEFVGCVRCIRILSPSEV 355
+ D +L+GD PW+ F + +RI+ S+
Sbjct: 138 DGDWMLVGDVPWDMFSSSCKRLRIMKGSDA 167