Jatropha Genome Database

JcCB0193291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0193291.10 - phase: 1 /pseudo/partial
         (218 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03690.1 | Symbols:  | coenzyme Q biosynthesis Coq4 family pr...   222   1e-58

>AT2G03690.1 | Symbols:  | coenzyme Q biosynthesis Coq4 family
           protein / ubiquinone biosynthesis Coq4 family protein |
           chr2:1122122-1123011 REVERSE
          Length = 226

 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 105/134 (78%), Positives = 118/134 (88%)

Query: 9   CSLLFGSAIGALVDPRRADFIAALGETTGKPAFEKVLQRMKRSPEGRAVVLERPHVISAE 68
            ++  GSA+GALVDPRRAD IAALGETTGKPAFE VL+RMK+S EGRA++LERP V+S +
Sbjct: 16  AAVAMGSALGALVDPRRADLIAALGETTGKPAFEMVLERMKKSEEGRAILLERPRVVSEQ 75

Query: 69  VRHAWDLPENTYGAAYARFMGSTNFSPDDRPPVRFMDTDELAYVALRAREPQDFWHTLFD 128
           V HAWDLPENT+GAAYA+FMGS NFSPDDRPPVRFM+TDELAYVA RARE  D WHTLF 
Sbjct: 76  VGHAWDLPENTFGAAYAKFMGSRNFSPDDRPPVRFMETDELAYVATRAREVHDLWHTLFG 135

Query: 129 LPTNLICESALKVI 142
           LPTNLI ES+LKVI
Sbjct: 136 LPTNLIGESSLKVI 149