Jatropha Genome Database

JcCB0192641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0192641.10 + phase: 0 /pseudo
         (234 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69010.1 | Symbols: BIM2 | BIM2 (BES1-interacting Myc-like pr...   198   3e-51
AT5G38860.1 | Symbols: BIM3 | BIM3 (BES1-interacting Myc-like pr...   101   4e-22
AT5G08130.3 | Symbols:  | BIM1; DNA binding / protein binding / ...   100   7e-22
AT5G08130.1 | Symbols: BIM1 | BIM1; DNA binding / protein bindin...    99   3e-21
AT5G08130.2 | Symbols: BIM1 | BIM1; DNA binding / protein bindin...    98   5e-21

>AT1G69010.1 | Symbols: BIM2 | BIM2 (BES1-interacting Myc-like
           protein 2); DNA binding / transcription factor |
           chr1:25941804-25943599 FORWARD
          Length = 311

 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/197 (51%), Positives = 129/197 (65%), Gaps = 18/197 (9%)

Query: 1   ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWTSEPTKLMPWRNSHWRV 60
           ILR+LIP+S+QKRDTASFLLEVI+YVQYLQEKVQKYEGSY GW+ EPTKL PWRN+HWRV
Sbjct: 67  ILRELIPNSEQKRDTASFLLEVIDYVQYLQEKVQKYEGSYPGWSQEPTKLTPWRNNHWRV 126

Query: 61  QSFMGHPQTVKNGSGPGLTFPGKFDENNIAISPSMLTSTQNLVEPDTSRDIASKGMERQP 120
           QS   HP  + NGSGPG+ FPGKF++N +  +P+++   Q  +E D +R I    +E QP
Sbjct: 127 QSLGNHPVAINNGSGPGIPFPGKFEDNTVTSTPAIIAEPQIPIESDKARAITGISIESQP 186

Query: 121 ELANKVMPLPMSLQTTMPTPVQSDGVVANPLQQSVSGVHLADFPVSGDAPNQQEKVPIEG 180
           EL +K +P           P+Q       P+   V G    + P + D   Q   + IEG
Sbjct: 187 ELDDKGLP-----------PLQ-------PILPMVQGEQANECPATSDGLGQSNDLVIEG 228

Query: 181 GTISISSVYSQGVHASV 197
           GTISISS YS  + +S+
Sbjct: 229 GTISISSAYSHELLSSL 245


>AT5G38860.1 | Symbols: BIM3 | BIM3 (BES1-interacting Myc-like
           protein 3); DNA binding / transcription factor |
           chr5:15559083-15560911 FORWARD
          Length = 298

 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 69/121 (57%), Gaps = 12/121 (9%)

Query: 2   LRDLIPHS--DQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWTSEPTKLMPWRNSHWR 59
           L D+IP +  DQKRD ASFLLEVIEY+ +LQEKV  YE S+Q W   PTKL+PWRNSH  
Sbjct: 56  LMDIIPQNQNDQKRDKASFLLEVIEYIHFLQEKVHMYEDSHQMWYQSPTKLIPWRNSHGS 115

Query: 60  VQSFMGHPQTVKNGSGPGLTFPGKFDENNIAISPSMLTSTQNLVEPDTSRDIASKGMERQ 119
           V     HPQ VK+ S            + +A S   L  T N V PD    +++K  E  
Sbjct: 116 VAEENDHPQIVKSFSS----------NDKVAASSGFLLDTYNSVNPDIDSAVSTKIPEHS 165

Query: 120 P 120
           P
Sbjct: 166 P 166


>AT5G08130.3 | Symbols:  | BIM1; DNA binding / protein binding /
           transcription factor | chr5:2606655-2608652 REVERSE
          Length = 408

 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 39/199 (19%)

Query: 1   ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWTSEPTKLMPWRNSHWRV 60
           +LR LIP+SDQKRD ASFLLEVIEY+Q+LQEK  KY  SYQGW  EP KL+ W N++ ++
Sbjct: 178 MLRQLIPNSDQKRDKASFLLEVIEYIQFLQEKADKYVTSYQGWNHEPAKLLNWSNNNQQL 237

Query: 61  QSFMGHPQTVKNGSGPGLTFPGKFDENNIAISPSMLTSTQNLV--EPDTSRDIASKGMER 118
                 P+        G+ F  K +E    I  S+L + Q +V   P T+          
Sbjct: 238 V-----PE--------GVAFAPKLEEEKNNIPVSVLATAQGVVIDHPTTA---------- 274

Query: 119 QPELANKVMPLPMSLQT-TMPTPVQSDGVVANPLQQ---SVSGVHLADFPVSGDAPNQQE 174
                    P P+S+Q+ +  +PV    +  NP+ Q    V+     +   S  +  ++E
Sbjct: 275 ------TTSPFPLSIQSNSFFSPV----IAGNPVPQFHARVASSEAVEPSPSSRSQKEEE 324

Query: 175 KVPIEGGTISISSVYSQGV 193
              +  G I ISSVYSQG+
Sbjct: 325 DEEVLEGNIRISSVYSQGL 343


>AT5G08130.1 | Symbols: BIM1 | BIM1; DNA binding / protein binding /
           transcription factor | chr5:2606655-2608652 REVERSE
          Length = 409

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 38/199 (19%)

Query: 1   ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWTSEPTKLMPWRNSHWRV 60
           +LR LIP+SDQKRD ASFLLEVIEY+Q+LQEK  KY  SYQGW  EP KL+ W++++   
Sbjct: 178 MLRQLIPNSDQKRDKASFLLEVIEYIQFLQEKADKYVTSYQGWNHEPAKLLNWQSNN--- 234

Query: 61  QSFMGHPQTVKNGSGPGLTFPGKFDENNIAISPSMLTSTQNLV--EPDTSRDIASKGMER 118
                + Q V      G+ F  K +E    I  S+L + Q +V   P T+          
Sbjct: 235 -----NQQLVPE----GVAFAPKLEEEKNNIPVSVLATAQGVVIDHPTTA---------- 275

Query: 119 QPELANKVMPLPMSLQT-TMPTPVQSDGVVANPLQQ---SVSGVHLADFPVSGDAPNQQE 174
                    P P+S+Q+ +  +PV    +  NP+ Q    V+     +   S  +  ++E
Sbjct: 276 ------TTSPFPLSIQSNSFFSPV----IAGNPVPQFHARVASSEAVEPSPSSRSQKEEE 325

Query: 175 KVPIEGGTISISSVYSQGV 193
              +  G I ISSVYSQG+
Sbjct: 326 DEEVLEGNIRISSVYSQGL 344


>AT5G08130.2 | Symbols: BIM1 | BIM1; DNA binding / protein binding /
           transcription factor | chr5:2606655-2609571 REVERSE
          Length = 529

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 38/199 (19%)

Query: 1   ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWTSEPTKLMPWRNSHWRV 60
           +LR LIP+SDQKRD ASFLLEVIEY+Q+LQEK  KY  SYQGW  EP KL+ W++++   
Sbjct: 298 MLRQLIPNSDQKRDKASFLLEVIEYIQFLQEKADKYVTSYQGWNHEPAKLLNWQSNN--- 354

Query: 61  QSFMGHPQTVKNGSGPGLTFPGKFDENNIAISPSMLTSTQNLV--EPDTSRDIASKGMER 118
                + Q V      G+ F  K +E    I  S+L + Q +V   P T+          
Sbjct: 355 -----NQQLVPE----GVAFAPKLEEEKNNIPVSVLATAQGVVIDHPTTA---------- 395

Query: 119 QPELANKVMPLPMSLQT-TMPTPVQSDGVVANPLQQ---SVSGVHLADFPVSGDAPNQQE 174
                    P P+S+Q+ +  +PV    +  NP+ Q    V+     +   S  +  ++E
Sbjct: 396 ------TTSPFPLSIQSNSFFSPV----IAGNPVPQFHARVASSEAVEPSPSSRSQKEEE 445

Query: 175 KVPIEGGTISISSVYSQGV 193
              +  G I ISSVYSQG+
Sbjct: 446 DEEVLEGNIRISSVYSQGL 464