Jatropha Genome Database

JcCB0192111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0192111.10 + phase: 2 /pseudo/partial
         (263 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55360.1 | Symbols: CER10, ECR, ATTSC13, TSC13 | CER10; 3-oxo...   211   5e-55

>AT3G55360.1 | Symbols: CER10, ECR, ATTSC13, TSC13 | CER10;
           3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid
           elongase/ trans-2-enoyl-CoA reductase (NADPH) |
           chr3:20521186-20522856 REVERSE
          Length = 310

 Score =  211 bits (536), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 128/255 (50%), Positives = 152/255 (59%), Gaps = 23/255 (9%)

Query: 1   QRPTIPLLXGSKERSVVLNKKKSXGLLXWED----KITVVFKDLGPXVSYCIILVFLGVH 56
           QR T+P+  GSK++ VVLN KKS  L  + D     +TVVFKDLG  VSY  +  F  + 
Sbjct: 45  QRLTLPVTPGSKDKPVVLNSKKS--LKEYCDGNNNSLTVVFKDLGAQVSYRTLFFFEYLG 102

Query: 57  ESFRSXXXXXXXXXXXXXXXQGRTCHQTSXDI----CFLYFKCIMETLFVLXFSHA-PPL 111
                               +    H          CF YFK I+ET FV  FSHA  P+
Sbjct: 103 PLLIYPVFYYFPVYKFLGYGEDCVIHPVQTYAMYYWCFHYFKRILETFFVHRFSHATSPI 162

Query: 112 CNVFRNCSSYWTFGCYMAYYVNHPLYAPVSDLQXKIGFWLWFDLSS----CKLLLPYLVG 167
            NVFRNC+ YW+FG Y+AYYVNHPLY PVSDLQ KIGF            C +LL     
Sbjct: 163 GNVFRNCAYYWSFGAYIAYYVNHPLYTPVSDLQMKIGFGFGLVCQVANFYCHILL----- 217

Query: 168 KKKKNLCSPDWSGGYQIPRGFLFNMVTCSNYTTEVYQWLGFNIAMQTVAGYFFLVVASMI 227
              KNL  P  +GGYQIPRGFLFN+VTC+NYTTE+YQWLGFNIA QT+AGY FL VA++I
Sbjct: 218 ---KNLRDPSGAGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTIAGYVFLAVAALI 274

Query: 228 MTNWAFANHRQLTKV 242
           MTNWA   H +L K+
Sbjct: 275 MTNWALGKHSRLRKI 289