Jatropha Genome Database

JcCB0191431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0191431.10 + phase: 2 /partial
         (141 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27600.2 | Symbols:  | glycosyl transferase family 43 protein...   154   2e-38
AT1G27600.1 | Symbols:  | glycosyl transferase family 43 protein...   154   2e-38
AT2G37090.1 | Symbols: IRX9 | IRX9 (IRREGULAR XYLEM 9); transfer...    87   4e-18
AT5G67230.1 | Symbols:  | glycosyl transferase family 43 protein...    50   5e-07

>AT1G27600.2 | Symbols:  | glycosyl transferase family 43 protein |
           chr1:9604083-9605881 REVERSE
          Length = 394

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/137 (54%), Positives = 92/137 (67%), Gaps = 4/137 (2%)

Query: 1   RFGTWTVAKV-MGQSKGFLDGPVCNGTRVIGWHVNEXXXXXXXXXXXHVDMSGFAFNSTI 59
           RFGTW VA +   ++K  L+GPVCNG++VIGWH NE           HVDMSGFAFNSTI
Sbjct: 256 RFGTWPVAMLAQSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRF---HVDMSGFAFNSTI 312

Query: 60  LWDPKRWHRPTIEPIRLLDTVRDGFQVSTIIEQVVEDESQMEGLLQDCSRVMVWHLQLES 119
           LWDPKRW RP   P R LDTV++GFQ ++ IEQVV DES+MEG+   CS ++ WHL L++
Sbjct: 313 LWDPKRWRRPFSHPTRQLDTVKEGFQETSFIEQVVADESEMEGVPPACSSILNWHLHLDA 372

Query: 120 SNPFYPPKWFTISNLDV 136
            +  YP  W    NL  
Sbjct: 373 LDVPYPQGWAIQKNLQA 389


>AT1G27600.1 | Symbols:  | glycosyl transferase family 43 protein |
           chr1:9604083-9605881 REVERSE
          Length = 394

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/137 (54%), Positives = 92/137 (67%), Gaps = 4/137 (2%)

Query: 1   RFGTWTVAKV-MGQSKGFLDGPVCNGTRVIGWHVNEXXXXXXXXXXXHVDMSGFAFNSTI 59
           RFGTW VA +   ++K  L+GPVCNG++VIGWH NE           HVDMSGFAFNSTI
Sbjct: 256 RFGTWPVAMLAQSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRF---HVDMSGFAFNSTI 312

Query: 60  LWDPKRWHRPTIEPIRLLDTVRDGFQVSTIIEQVVEDESQMEGLLQDCSRVMVWHLQLES 119
           LWDPKRW RP   P R LDTV++GFQ ++ IEQVV DES+MEG+   CS ++ WHL L++
Sbjct: 313 LWDPKRWRRPFSHPTRQLDTVKEGFQETSFIEQVVADESEMEGVPPACSSILNWHLHLDA 372

Query: 120 SNPFYPPKWFTISNLDV 136
            +  YP  W    NL  
Sbjct: 373 LDVPYPQGWAIQKNLQA 389


>AT2G37090.1 | Symbols: IRX9 | IRX9 (IRREGULAR XYLEM 9);
           transferase, transferring glycosyl groups /
           xylosyltransferase | chr2:15587671-15589223 REVERSE
          Length = 351

 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 71/118 (60%), Gaps = 10/118 (8%)

Query: 2   FGTWTVAKVMGQSKGFL-DGPVCNGTRVIGWHVNEXXXXXXXXXXXHVDMSGFAFNSTIL 60
           FGTW +A +    K  + +GPVC  ++V+GWH+ +           H+  S FAFNS+IL
Sbjct: 234 FGTWPMALLSANRKRVVVEGPVCESSQVLGWHLRKINNETETKPPIHI--SSFAFNSSIL 291

Query: 61  WDPKRWHRPTIEPIRLLDTVRDGFQVSTIIEQVVEDESQMEGL-LQDCSRVMVWHLQL 117
           WDP+RW RP+       D+++   QV      V+ED+++++GL  QDCS++M+W L+ 
Sbjct: 292 WDPERWGRPSSVEGTKQDSIKYVKQV------VLEDDTKLKGLPAQDCSKIMLWRLKF 343


>AT5G67230.1 | Symbols:  | glycosyl transferase family 43 protein |
           chr5:26822506-26824181 FORWARD
          Length = 492

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 16/133 (12%)

Query: 18  LDGPVCNGT-RVIGWHVNEXXXXXXXXXX----------XHVDMSGFAFNSTILWDPKRW 66
           + GP CN + +++GWH+                        ++ SGF  NS +LW     
Sbjct: 308 IQGPSCNSSEKLVGWHIFNTQPYAKKTAVYIDEKAPVMPSKMEWSGFVLNSRLLWKESLD 367

Query: 67  HRPT-IEPIRLLDTVRDGFQVSTIIEQVVEDESQMEGLLQDCSRVMVWHLQLES-SNPFY 124
            +P  ++ + LLD   DG+        +V+D S +E L     RV++W L++E+ ++  +
Sbjct: 368 DKPAWVKDLSLLD---DGYAEIESPLSLVKDPSMVEPLGSCGRRVLLWWLRVEARADSKF 424

Query: 125 PPKWFTISNLDVT 137
           PP W   S L++T
Sbjct: 425 PPGWIIKSPLEIT 437