Jatropha Genome Database

JcCB0190821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190821.20 - phase: 2 /partial
         (66 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20130.1 | Symbols: LCV1 | LCV1 (LIKE COV 1) | chr2:8690614-8...    69   4e-13
AT2G18460.1 | Symbols: LCV3 | LCV3 (like cov 3) | chr2:8001638-8...    68   1e-12
AT2G20120.1 | Symbols: COV1 | COV1 (CONTINUOUS VASCULAR RING) | ...    67   3e-12
AT2G18460.2 | Symbols: LCV3 | LCV3 (like cov 3) | chr2:8001320-8...    66   5e-12
AT1G43130.1 | Symbols: LCV2 | LCV2 (LIKE COV 2) | chr1:16228661-...    60   3e-10

>AT2G20130.1 | Symbols: LCV1 | LCV1 (LIKE COV 1) |
           chr2:8690614-8692234 REVERSE
          Length = 256

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 38/49 (77%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLD 49
           YVPTNHLY+GDI L+N+ND++RPNLSVR          MS+PQI++TLD
Sbjct: 198 YVPTNHLYIGDILLVNSNDVIRPNLSVREGIEIVVSGGMSMPQILSTLD 246


>AT2G18460.1 | Symbols: LCV3 | LCV3 (like cov 3) |
           chr2:8001638-8002854 FORWARD
          Length = 213

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/49 (59%), Positives = 37/49 (75%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLD 49
           YVPTNHLY+GDIFL+++ DI+RPNLSVR          MS+P ++TTLD
Sbjct: 159 YVPTNHLYLGDIFLISSKDIIRPNLSVREGIEIVISGGMSIPHMLTTLD 207


>AT2G20120.1 | Symbols: COV1 | COV1 (CONTINUOUS VASCULAR RING) |
           chr2:8687568-8689321 REVERSE
          Length = 268

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 38/49 (77%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLD 49
           YVPTNHLY+GD+ L+N+ND++RPNLSVR          MS+PQI++T+D
Sbjct: 208 YVPTNHLYIGDLLLVNSNDVIRPNLSVREGIEIVVSGGMSMPQILSTVD 256


>AT2G18460.2 | Symbols: LCV3 | LCV3 (like cov 3) |
           chr2:8001320-8002810 FORWARD
          Length = 251

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/49 (59%), Positives = 37/49 (75%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLD 49
           YVPTNHLY+GDIFL+++ DI+RPNLSVR          MS+P ++TTLD
Sbjct: 198 YVPTNHLYLGDIFLISSKDIIRPNLSVREGIEIVISGGMSIPHMLTTLD 246


>AT1G43130.1 | Symbols: LCV2 | LCV2 (LIKE COV 2) |
           chr1:16228661-16231158 REVERSE
          Length = 261

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 37/49 (75%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLD 49
           YVPTNHLY+GD+FL+++ +I+RPNLS+R          M++PQ+++ +D
Sbjct: 194 YVPTNHLYIGDVFLVSSEEIIRPNLSIREGIEIIVSVGMTMPQVISHVD 242