Jatropha Genome Database

JcCB0190531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190531.10 - phase: 0 /partial
         (165 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18340.1 | Symbols:  | basal transcription factor complex sub...   192   7e-50

>AT1G18340.1 | Symbols:  | basal transcription factor complex
           subunit-related | chr1:6311612-6313734 REVERSE
          Length = 301

 Score =  192 bits (489), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 90/109 (82%), Positives = 98/109 (89%)

Query: 57  IQRVFRSGPLNPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGSHNSAFLQ 116
           IQRVFRSG L+PQPRILCLQGSPDGPEQYVAVMN+IFSAQR MVPIDSCY+G  NSAFLQ
Sbjct: 136 IQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQ 195

Query: 117 QASYITGGVYVKPQHLDGLFQYLVTVFATDLHCRSFLQLPRPAGVDFRA 165
           QASYITGGV+  P+ LDGLFQYL T+FATDLH R F+QLP+P GVDFRA
Sbjct: 196 QASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRA 244